View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11288_high_7 (Length: 302)
Name: NF11288_high_7
Description: NF11288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11288_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 3479940 - 3480210
Alignment:
| Q |
1 |
agatatctaaagcgtgaccttagtggcctgatatcgggtcactcgagtcacacttcatagatcacattggatgagatattgcttgtaaatttgtttataa |
100 |
Q |
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| T |
3479940 |
agatatctaaagagtgaccttagtggcctgatatcgggtcactcgagtcacacttcatagatcacattggatgagatattgcttgtaaatttgtttataa |
3480039 |
T |
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| Q |
101 |
taagtcggagcagctcacaccttacattggatgagttaagcccaaccaaaattttaagacaatgcaagtaacttcgaaaagcaaaataacaatttttacc |
200 |
Q |
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| T |
3480040 |
taagtcggggcagctcacaccttacattggatgagttaagcccaaccaaaattttaagacaatgcaagtaacttcaaaaagcaaaataacaatttttacc |
3480139 |
T |
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| Q |
201 |
tgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttctgc |
271 |
Q |
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| T |
3480140 |
tgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttctgc |
3480210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 3455519 - 3455606
Alignment:
| Q |
182 |
caaaataacaatttttacctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttct |
269 |
Q |
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| T |
3455519 |
caaaataacaatatttacctgatctgttatttccattcccatatagtttactccaattgtttcacctgccttgctaaacacaggttct |
3455606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 269
Target Start/End: Complemental strand, 48694814 - 48694740
Alignment:
| Q |
195 |
tttacctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttct |
269 |
Q |
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|||||||||||||||| ||||||||||| | || | |||||||||||| ||||||||||| || ||||||||| |
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| T |
48694814 |
tttacctgatcggttacatccattcccatgtaattgattccaattgtttcacctgccttgctgaatacaggttct |
48694740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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