View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11289_high_10 (Length: 375)
Name: NF11289_high_10
Description: NF11289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11289_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 53 - 358
Target Start/End: Original strand, 5286378 - 5286683
Alignment:
| Q |
53 |
tttggcataggtaatcttccattcatatatttggctgttcctatttgcaaattgtaactagacaaaaggtgcatttttggacagatagatggctatctga |
152 |
Q |
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| T |
5286378 |
tttggcataggtaatcttccattcatatatttggctgttcctatttgcaaattgtaactagacaaaaggtacatttttggacagatagatggctatctga |
5286477 |
T |
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| Q |
153 |
ccctcttgtggagttactcaacatccctccttagttgcatgcatattgtttggacattcaaattatatatcctagggacaaaggaatttcaatgaaaagt |
252 |
Q |
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| T |
5286478 |
ccctcttgtggagttactcaacatccctccttagttgcatgcatattgtttgcacattcaaattatatatcctagggacaaaggaatttcaatgaaaagt |
5286577 |
T |
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| Q |
253 |
tatcttttatttttgattaaattttgcaaacttctttgtcttaaggatgccaccttagatcatcttcattagacaacctccttgaaaagtttgaccaatg |
352 |
Q |
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| T |
5286578 |
tatcttttatttttgattaaattttgcaaacttctttgtcttaaggatgccaccttagatcatcttcattagacaacctccttgaaaagtttgaccaatg |
5286677 |
T |
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| Q |
353 |
aatgat |
358 |
Q |
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|||||| |
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| T |
5286678 |
aatgat |
5286683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5288764 - 5288709
Alignment:
| Q |
1 |
tcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttg |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5288764 |
tcaattttgatatcttgtgttctttttaagtgttccatgtcattcattatattttg |
5288709 |
T |
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