View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11289_high_12 (Length: 341)
Name: NF11289_high_12
Description: NF11289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11289_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 132 - 331
Target Start/End: Original strand, 16895055 - 16895253
Alignment:
| Q |
132 |
taaacccagttgaatcatgcagtatacacatt--gggtctaaaatgttttctcttccccaaaaggaaaagtatatgtacatgatgatgatgatggtagag |
229 |
Q |
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| T |
16895055 |
taaacccaattgaatcatgcagtatacatattatgggtctaaaatgttttctcttccccaaagggaaaagta---gtatctgtacatgatcacggcacac |
16895151 |
T |
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| Q |
230 |
actgagatgagcatcctaagagcctactctactaacttgctccttgggtgtgctctcaaagttcttatcagcacttgctacctcaaaatcatccctccta |
329 |
Q |
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| T |
16895152 |
tctgagacaagcctcctaagagcctactctactcacttgttccttggatgtgctctcaaagatcttatcagcacttgctacctcaaaaccatccctccta |
16895251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 2 - 116
Target Start/End: Original strand, 3001896 - 3002011
Alignment:
| Q |
2 |
taatgatatattgtactaaatgggatagtaatactatttaaaggttgcataaacggtaattgctgcagtttcttgtccaagctttatgac-attgacttg |
100 |
Q |
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| T |
3001896 |
taatgatatattatactaaatgggatagtaatactatttaaaggttgcataaatggtaattgctgcagtttcttgtccaaactttatgacttttgacttg |
3001995 |
T |
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| Q |
101 |
tttttacagagttatc |
116 |
Q |
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| T |
3001996 |
tttttacatagttatc |
3002011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 253 - 331
Target Start/End: Original strand, 32707116 - 32707194
Alignment:
| Q |
253 |
ctactctactaacttgctccttgggtgtgctctcaaagttcttatcagcacttgctacctcaaaatcatccctcctatg |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32707116 |
ctactctactaacttgctccttgggtgtgctctcaaagttcttatcagcacttgctacctcaaaatcatccctcctatg |
32707194 |
T |
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