View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11289_high_14 (Length: 328)

Name: NF11289_high_14
Description: NF11289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11289_high_14
NF11289_high_14
[»] chr3 (4 HSPs)
chr3 (30-263)||(5351915-5352147)
chr3 (30-157)||(5344897-5345024)
chr3 (107-151)||(5325075-5325119)
chr3 (99-157)||(5338089-5338147)
[»] chr7 (8 HSPs)
chr7 (259-328)||(39577595-39577664)
chr7 (259-328)||(39592072-39592141)
chr7 (259-328)||(39334759-39334828)
chr7 (259-328)||(39346023-39346092)
chr7 (267-327)||(39541732-39541792)
chr7 (259-328)||(39360567-39360636)
chr7 (267-328)||(39567779-39567840)
chr7 (267-327)||(39550989-39551049)
[»] chr8 (1 HSPs)
chr8 (54-146)||(14535283-14535375)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 30 - 263
Target Start/End: Original strand, 5351915 - 5352147
Alignment:
Q  30 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351915 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 5352014  T
Q  130 caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaataaaacgtatttgttctttatttacatt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||    
T  5352015 caacttcaaggcaaaaattgaaacaactttaagttccataaattgcttcaatcgtgatttttattcaattaaaaaaatgta-ttgttctttatttgcatt 5352113  T
Q  230 tagaattttatttgcattgttgccttgtcctgtg 263  Q
    ||||||||||||||||||||||||||||||||||    
T  5352114 tagaattttatttgcattgttgccttgtcctgtg 5352147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 5344897 - 5345024
Alignment:
Q  30 tcagcctccagcaaaatttaacggtgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttaccctt 129  Q
    |||||||||||||||||||||  ||||||| |||||||||||| ||||||| |||||||  |||  || | |||| |||||||||||||||||||| ||     
T  5344897 tcagcctccagcaaaatttaatagtgatggtgatttgattgatgaagatgctaagaataggttgttggcaattctgttgtccttgaaggcatttactctg 5344996  T
Q  130 caacttcaaggcaaaaattgaaacaact 157  Q
    ||||||||||||||||||||||||||||    
T  5344997 caacttcaaggcaaaaattgaaacaact 5345024  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 5325119 - 5325075
Alignment:
Q  107 tgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaa 151  Q
    |||||||||||| |||||||||| |||||||||||| ||||||||    
T  5325119 tgtccttgaaggaatttacccttaaacttcaaggcagaaattgaa 5325075  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 5338147 - 5338089
Alignment:
Q  99 agttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaattgaaacaact 157  Q
    ||||||| ||||||| |||| |||||||||||| ||||||||  ||| |||||||||||    
T  5338147 agttcttgtgtccttaaaggaatttacccttcagcttcaaggttaaatttgaaacaact 5338089  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 39577664 - 39577595
Alignment:
Q  259 ctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39577664 ctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 39577595  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 259 - 328
Target Start/End: Complemental strand, 39592141 - 39592072
Alignment:
Q  259 ctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 328  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||| ||||| || ||||||||||||||    
T  39592141 ctgtggtgggaaatgaaatgttaagaggtatttctggaggacaaagaaaacgtgtaacgacaggtaaaac 39592072  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 39334759 - 39334828
Alignment:
Q  259 ctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 328  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39334759 ctgttgtgggaaatgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac 39334828  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 39346023 - 39346092
Alignment:
Q  259 ctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 328  Q
    |||| ||||||||||||||| |||||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39346023 ctgttgtgggaaatgcaatgataagaggtatctctggcggacaaaagaaacgccttacaacaggtaaaac 39346092  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 39541792 - 39541732
Alignment:
Q  267 ggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa 327  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||| ||||| ||||||||||    
T  39541792 ggaaatgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaacaggtaaaa 39541732  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 328
Target Start/End: Original strand, 39360567 - 39360636
Alignment:
Q  259 ctgtggtgggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 328  Q
    |||| ||||||||||||||| |||||| ||||||||| ||||||| ||||||  |||| |||||||||||    
T  39360567 ctgttgtgggaaatgcaatgataagagctatctctggcggacaaaagaaacgccttacaacaggtaaaac 39360636  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 328
Target Start/End: Complemental strand, 39567840 - 39567779
Alignment:
Q  267 ggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaac 328  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||  |||| |||||||||||    
T  39567840 ggaaatgcaatgttacgaggtatctctggtggacaaaagaaacgccttacaacaggtaaaac 39567779  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 267 - 327
Target Start/End: Complemental strand, 39551049 - 39550989
Alignment:
Q  267 ggaaatgcaatgttaagaggtatctctggaggacaaaggaaacgggttacgacaggtaaaa 327  Q
    ||||||||||||||| ||||||||||||| ||||||| |||||| ||||| || |||||||    
T  39551049 ggaaatgcaatgttacgaggtatctctggtggacaaaagaaacgcgttacaactggtaaaa 39550989  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 146
Target Start/End: Complemental strand, 14535375 - 14535283
Alignment:
Q  54 tgatggcgatttgattgatcaagatgccaagaataatttggagggagttcttttgtccttgaaggcatttacccttcaacttcaaggcaaaaa 146  Q
    ||||||||||||||||||| |||| || |||||||| ||| |   ||||||||| || ||| |||||||||| ||    ||||||||||||||    
T  14535375 tgatggcgatttgattgatgaagaggctaagaataagttgaaacaagttcttttatctttgcaggcatttactctaaggcttcaaggcaaaaa 14535283  T

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