View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11289_high_1_N (Length: 769)
Name: NF11289_high_1_N
Description: NF11289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11289_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 342 - 740
Target Start/End: Complemental strand, 32707096 - 32706698
Alignment:
| Q |
342 |
atatcaatcattatattgtacagcagcagatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
441 |
Q |
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| T |
32707096 |
atatcaatcattatattgtgcagcagcagatgtaaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatt |
32706997 |
T |
|
| Q |
442 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccgaaatgaggcaacaccatgcttaaagggatatc |
541 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32706996 |
tagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatc |
32706897 |
T |
|
| Q |
542 |
tgggatatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgtcgttacctgaaatcgacgca |
641 |
Q |
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| T |
32706896 |
tgggatatttggaagtgaaattgatgcaccacgcctatagctgctatgcctgtgtcttggaaagtagaatttgtaatcgtcgttagctgaaatcgacgca |
32706797 |
T |
|
| Q |
642 |
ttctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
740 |
Q |
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| T |
32706796 |
ttctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
32706698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 32707194 - 32707116
Alignment:
| Q |
11 |
cataggagggatgattttgaggtagcaagtgctgataagaactttgagagcacacccaaggagcaagttagtagagtag |
89 |
Q |
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| T |
32707194 |
cataggagggatgattttgaggtagcaagtgctgataagaactttgagagcacacccaaggagcaagttagtagagtag |
32707116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 664 - 716
Target Start/End: Complemental strand, 32749306 - 32749254
Alignment:
| Q |
664 |
agtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaa |
716 |
Q |
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||||||| |||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
32749306 |
agtgaaagcagcatagtaccaattttcaatctctacaaacatagaaatccaaa |
32749254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 302; Significance: 1e-169; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 226 - 621
Target Start/End: Complemental strand, 3002011 - 3001615
Alignment:
| Q |
226 |
gataactctgtaaaaacaagtcaat-gtcataaagcttggacaagaaactgcagcaattaccgtttatgcaacctttaaatagtattactatcccattta |
324 |
Q |
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| T |
3002011 |
gataactatgtaaaaacaagtcaaaagtcataaagtttggacaagaaactgcagcaattaccatttatgcaacctttaaatagtattactatcccattta |
3001912 |
T |
|
| Q |
325 |
gtacaatatatcattagatatcaatcattatattgtacagcagcagatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatt |
424 |
Q |
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||| |||||||||||| ||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3001911 |
gtataatatatcattacata-caatcattatattgtgcagcagcagatgccaaagcacattatattcatattcataaccaacacatgctagtaaaatatt |
3001813 |
T |
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| Q |
425 |
tccgtagcggca-caatttagacattgcacaaaaaactgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccgaaatgaggcaacac |
523 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||||||||||||| |
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| T |
3001812 |
tccgtagtggcaacaatttagacattgcacaaaaaactgcagtagcttacgtattgagcatcttgaaagcagcacttcattttccaaaatgaggcaacac |
3001713 |
T |
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| Q |
524 |
catgcttaaagggatatctgggatatttggaagtgaaattgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgt |
621 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
3001712 |
catgcttaaagggatatgtgggatatttggaagtgaaattgatgcaccacgcctatacctgctatacctgtgtcttggagagtagaatttgtaatcgt |
3001615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 16895253 - 16895055
Alignment:
| Q |
11 |
cataggagggatgattttgaggtagcaagtgctgataagaactttgagagcacacccaaggagcaagttagtagagtaggctcttaggatgctcatctca |
110 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||| ||| ||||| |
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| T |
16895253 |
cataggagggatggttttgaggtagcaagtgctgataagatctttgagagcacatccaaggaacaagtgagtagagtaggctcttaggaggcttgtctca |
16895154 |
T |
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| Q |
111 |
gtctctaccatcatcatcatcatgtacatatacttttccttttggggaagagaaaacattttagaccc--aatgtgtatactgcatgattcaactgggtt |
208 |
Q |
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| | | || | ||||| || ||| ||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |
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| T |
16895153 |
gagtgtgccgtgatcatgtacagatac---tacttttccctttggggaagagaaaacattttagacccataatatgtatactgcatgattcaattgggtt |
16895057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 640 - 714
Target Start/End: Complemental strand, 3001291 - 3001217
Alignment:
| Q |
640 |
cattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatcca |
714 |
Q |
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||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
3001291 |
cattctggtataggaaaaagtaacagtgaaaacagcacagtaccaattttcaatatctacaaacaaagaaatcca |
3001217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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