View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11289_high_2 (Length: 539)
Name: NF11289_high_2
Description: NF11289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11289_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 28 - 501
Target Start/End: Original strand, 3479737 - 3480210
Alignment:
| Q |
28 |
attaagttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattctttctctttttctcacctgcaattgtttttcgaaattataa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3479737 |
attaagttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattttttctctttttctcacctgcaattgtttttcaaaattataa |
3479836 |
T |
|
| Q |
128 |
atattattttcacaaaaacaagattgaaatgtattagaatttagtgaagacttataaggttaagacatcccccacttataaacacatattcacgcccacg |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3479837 |
atattattttcacaaaaacaagattgaaatgtattagaatttggtgaagacttataaggttaagacatcccccacttataaacacatattcacgcccacg |
3479936 |
T |
|
| Q |
228 |
actagatatctaaagcgtgaccttagtggcctgatatcgggtcactcgagtcacacttcatagatcacattggatgagatattgcttgtaaatttgttta |
327 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3479937 |
actagatatctaaagagtgaccttagtggcctgatatcgggtcactcgagtcacacttcatagatcacattggatgagatattgcttgtaaatttgttta |
3480036 |
T |
|
| Q |
328 |
taataagtcggagcagctcacaccttacattggatgagttaagcccaaccaaaattttaagacaatgcaagtaacttcgaaaagcaaaataacaattttt |
427 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3480037 |
taataagtcggggcagctcacaccttacattggatgagttaagcccaaccaaaattttaagacaatgcaagtaacttcaaaaagcaaaataacaattttt |
3480136 |
T |
|
| Q |
428 |
acctgatcggttatttccattcccctatggtttactccaattgtttctcctgccttgctaaacacaggttctgc |
501 |
Q |
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| T |
3480137 |
acctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttctgc |
3480210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 28 - 148
Target Start/End: Original strand, 3455372 - 3455490
Alignment:
| Q |
28 |
attaagttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattctttctctttttctcacctgcaattgtttttcgaaattataa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| || ||||||| |
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| T |
3455372 |
attaagttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattctttctctttttctcacctgcgat--ttttttgatattataa |
3455469 |
T |
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| Q |
128 |
atattattttcacaaaaacaa |
148 |
Q |
| |
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||||| | ||||||| ||||| |
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| T |
3455470 |
atattttcttcacaagaacaa |
3455490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 412 - 499
Target Start/End: Original strand, 3455519 - 3455606
Alignment:
| Q |
412 |
caaaataacaatttttacctgatcggttatttccattcccctatggtttactccaattgtttctcctgccttgctaaacacaggttct |
499 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3455519 |
caaaataacaatatttacctgatctgttatttccattcccatatagtttactccaattgtttcacctgccttgctaaacacaggttct |
3455606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 48695037 - 48694965
Alignment:
| Q |
32 |
agttctgtttcctttgctttctgaactgcaatttcttcccttagctttgccattctttctctttttctcacct |
104 |
Q |
| |
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|||||||||||||||||||||||||| ||||| ||||| | | ||| ||||| |||||||||||||| |||| |
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| T |
48695037 |
agttctgtttcctttgctttctgaacagcaatctcttcgcgaatcttcgccatcctttctctttttctaacct |
48694965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 499
Target Start/End: Complemental strand, 48694814 - 48694740
Alignment:
| Q |
425 |
tttacctgatcggttatttccattcccctatggtttactccaattgtttctcctgccttgctaaacacaggttct |
499 |
Q |
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|||||||||||||||| ||||||||| | | || | |||||||||||| ||||||||||| || ||||||||| |
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| T |
48694814 |
tttacctgatcggttacatccattcccatgtaattgattccaattgtttcacctgccttgctgaatacaggttct |
48694740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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