View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11289_high_3 (Length: 454)
Name: NF11289_high_3
Description: NF11289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11289_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 137 - 423
Target Start/End: Original strand, 33756985 - 33757270
Alignment:
| Q |
137 |
gtgaaagttagttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacagccacca |
236 |
Q |
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| T |
33756985 |
gtgaaagtttgttatggcgacggagcaaccaccggtgacacttccggcatccgtagaaaatctaataaaccaaatatgcgtgaaacaatcacaaccacca |
33757084 |
T |
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| Q |
237 |
ctcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcagtattatttacccacacaccaattcgaaccactttt |
336 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| || | ||||||||||||||||||||| |
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| T |
33757085 |
ctcgatccttcaacgatacgactcctcgcaacgatggcagaaaatcaagctcttcaaattctcaatgttattt-ccaatacaccaattcgaaccactttt |
33757183 |
T |
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| Q |
337 |
aatgctttcaccctcttcatgattaataaacattcttctcaatcacaatcaccgtcgccgtcacagtcatttccgttaccgtcacag |
423 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |
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| T |
33757184 |
aatgctttcactctcttcatgattaataaacattcttctcaatcacaatcaccgtcacagtcacagtcatttccattaccgtcacag |
33757270 |
T |
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