View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11289_high_4 (Length: 416)
Name: NF11289_high_4
Description: NF11289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11289_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 244 - 386
Target Start/End: Complemental strand, 49018995 - 49018853
Alignment:
| Q |
244 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
49018995 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttctga |
49018896 |
T |
|
| Q |
344 |
tcaccaacacaactcacaaacagttccaaaatcactcatgcat |
386 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
49018895 |
tcaccaacacaacacacaaacagttccaaaatcactcatgcat |
49018853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 49019210 - 49019059
Alignment:
| Q |
26 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
125 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49019210 |
catcatcaaattcaataaataattccaacccagatgtaaaac--aaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
49019113 |
T |
|
| Q |
126 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctgga |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49019112 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctgga |
49019059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 179
Target Start/End: Complemental strand, 8345314 - 8345161
Alignment:
| Q |
26 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
125 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
8345314 |
catcatcaaattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcacc |
8345215 |
T |
|
| Q |
126 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctgga |
179 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
8345214 |
aatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctgga |
8345161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 26 - 179
Target Start/End: Original strand, 42824300 - 42824453
Alignment:
| Q |
26 |
catcatcaaattcaataaataattccaacccagatataaaatttaaacttcagaaaaatcaagtaaaaaggccacatacctgacattctctattttcact |
125 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
42824300 |
catcatcaaattcaataaataattccaaaccagatataaaatttaaacttcagaaaaattaattaaaaaggccacatacctgacattctatattttcacc |
42824399 |
T |
|
| Q |
126 |
aatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctgga |
179 |
Q |
| |
|
|||||||||| ||||||||||||| || |||||||||||||||||||||||||| |
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|
| T |
42824400 |
aatcaattcatcagaagttgaattggacgaaatccctacatcaattttcctgga |
42824453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 8345097 - 8344964
Alignment:
| Q |
244 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
8345097 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctgg |
8344998 |
T |
|
| Q |
344 |
tcaccaacacaactcacaaacagttccaaaatca |
377 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
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|
| T |
8344997 |
tcaccaacacaacacacaaacagttccaaaatca |
8344964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 244 - 377
Target Start/End: Original strand, 42824544 - 42824677
Alignment:
| Q |
244 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagccaaacctctactttgtaccatcctccaattaattggttttga |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
42824544 |
tggaagaagaaaatgaataagcaagtacctttcctaatcccttacctcccttaacagtcaaacctctactttgtaccatcctccaattaattggttctgg |
42824643 |
T |
|
| Q |
344 |
tcaccaacacaactcacaaacagttccaaaatca |
377 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
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|
| T |
42824644 |
tcaccaacacaacacacaaacagttccaaaatca |
42824677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 50861337 - 50861266
Alignment:
| Q |
103 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttc |
174 |
Q |
| |
|
||||| |||||||||||| ||| |||||||||||||| |||||||||||| |||||||| |||||||||||| |
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| T |
50861337 |
acctggcattctctatttccaccaatcaattcaccagtagttgaattcgacgaaatcccaacatcaattttc |
50861266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 39073745 - 39073819
Alignment:
| Q |
103 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctg |
177 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| |||| ||||| || |||||| ||||||||||||||| |
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| T |
39073745 |
acctgacattctctatttccatcaatcaattcaccaaaagtcgaatttgacaaaatccaaacatcaattttcctg |
39073819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 36588096 - 36588170
Alignment:
| Q |
103 |
acctgacattctctattttcactaatcaattcaccagaagttgaattcgatgaaatccctacatcaattttcctg |
177 |
Q |
| |
|
|||||||| ||||||| | | | |||||||||||||||||| ||||| || |||||||| | ||||||||||||| |
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|
| T |
36588096 |
acctgacaatctctatatccgccaatcaattcaccagaagtcgaatttgacgaaatcccaagatcaattttcctg |
36588170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 30331070 - 30331035
Alignment:
| Q |
26 |
catcatcaaattcaataaataattccaacccagata |
61 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30331070 |
catcatcaaattcaataaataattccgacccagata |
30331035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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