View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11289_high_5 (Length: 412)

Name: NF11289_high_5
Description: NF11289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11289_high_5
NF11289_high_5
[»] chr3 (8 HSPs)
chr3 (20-378)||(29821876-29822219)
chr3 (293-344)||(49333873-49333923)
chr3 (295-369)||(54653010-54653085)
chr3 (295-348)||(43102304-43102357)
chr3 (293-388)||(33149973-33150069)
chr3 (293-348)||(47807849-47807904)
chr3 (293-338)||(12992033-12992077)
chr3 (293-338)||(50259425-50259469)
[»] chr5 (3 HSPs)
chr5 (150-292)||(40880222-40880364)
chr5 (293-348)||(1663507-1663562)
chr5 (293-342)||(10084988-10085037)
[»] chr8 (4 HSPs)
chr8 (295-374)||(118777-118856)
chr8 (293-348)||(5777111-5777166)
chr8 (293-338)||(45436181-45436225)
chr8 (304-348)||(7487145-7487188)
[»] chr6 (2 HSPs)
chr6 (341-385)||(24546535-24546579)
chr6 (19-52)||(4030718-4030751)
[»] chr1 (2 HSPs)
chr1 (295-369)||(3978364-3978439)
chr1 (293-338)||(38961773-38961817)
[»] chr7 (3 HSPs)
chr7 (293-369)||(38407199-38407275)
chr7 (295-348)||(19279339-19279392)
chr7 (293-342)||(25154619-25154668)
[»] chr4 (1 HSPs)
chr4 (293-369)||(26791090-26791166)
[»] chr2 (1 HSPs)
chr2 (295-369)||(34039627-34039702)


Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 378
Target Start/End: Original strand, 29821876 - 29822219
Alignment:
Q  20 acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtttagaattatgtagtttag 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||    
T  29821876 acatcatcaaaattatatatgttaaatagtttatttataatttaaaataattgcaatagtcagtttctataattatgcagtt---------------tag 29821960  T
Q  120 taactgctattttctaggaagttagttatcatgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggcc 219  Q
    ||||| | |||||||||||||||||||  |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||    
T  29821961 taactaccattttctaggaagttagtttccatgtaatatgtatttgaatgattgtacttttatggaatcatgaagaaaatattcagaaaaacttccagcc 29822060  T
Q  220 ttcctttcttctttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatttatcatgttgttgttgaaattgagattggggt 319  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  29822061 ttcctttcttttttaggagacccatcccttctcgaattggaataatcactacttctctaacaatcatctatcatattgttgttgaaattgagattggggt 29822160  T
Q  320 gtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 378  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29822161 gtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaatgttcttgtt 29822219  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 344
Target Start/End: Original strand, 49333873 - 49333923
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgat 344  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  49333873 tgttgttgttgaaattgagatt-gggtgtttgtggttgttgaaaaggttgat 49333923  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 54653085 - 54653010
Alignment:
Q  295 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 369  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  54653085 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 54653010  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 43102357 - 43102304
Alignment:
Q  295 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 348  Q
    ||||||||||||||| ||||||  ||||||||||| |||||||||||| |||||    
T  43102357 ttgttgttgaaattgggattggaatgtttgtggttgttgaaaaggttgttgttg 43102304  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 388
Target Start/End: Complemental strand, 33150069 - 33149973
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgatattgtaatgaagaaa-tgttcttgttgttgatgatg 388  Q
    |||||||||||||||||  |||||||||||| ||||| ||| |||||||| || || || |||||| || || ||| |||| ||||||||| |||||    
T  33150069 tgttgttgttgaaattgccattggggtgtttatggttcttgcaaaggttgctgctgttgttattgtgattaaaaaattgttgttgttgttgttgatg 33149973  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 47807849 - 47807904
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 348  Q
    ||||||||||||||||||||||  | ||||||||||| | |||||||||| |||||    
T  47807849 tgttgttgttgaaattgagattaagatgtttgtggttgtcgaaaaggttgttgttg 47807904  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 12992033 - 12992077
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 338  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  12992033 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 12992077  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 50259469 - 50259425
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 338  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  50259469 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 50259425  T

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Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 150 - 292
Target Start/End: Complemental strand, 40880364 - 40880222
Alignment:
Q  150 atgtaatatgtatttgaatgattgtacgtttatcgaatcatgaagaaaatattcagaaaaacttccggccttcctttcttctttaggagacccatccctt 249  Q
    ||||||| ||||||||||||||||||||||| | ||||||| ||||||||||||| |||||||| | |||||||||||||||||||||||| ||||||||    
T  40880364 atgtaatgtgtatttgaatgattgtacgtttgttgaatcattaagaaaatattcataaaaacttacagccttcctttcttctttaggagactcatccctt 40880265  T
Q  250 ctcgaattggaataatcactacttctctaacaatcatttatca 292  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  40880264 ctcgaattgggataatcactacttctttaacaatcatctatca 40880222  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 1663562 - 1663507
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 348  Q
    ||||||||||||||||||||||| | ||||||||||| ||||||| |||| |||||    
T  1663562 tgttgttgttgaaattgagattgagatgtttgtggttgttgaaaaagttgttgttg 1663507  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 342
Target Start/End: Complemental strand, 10085037 - 10084988
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 342  Q
    ||||||||||||||||||||||||  |||| |||||| ||||||||||||    
T  10085037 tgttgttgttgaaattgagattggaatgttcgtggttgttgaaaaggttg 10084988  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 295 - 374
Target Start/End: Original strand, 118777 - 118856
Alignment:
Q  295 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaatgttct 374  Q
    ||||| ||||||||||||||||||||||| ||| || ||||||||||||||||| || | ||||| |||||||||| ||||    
T  118777 ttgttattgaaattgagattggggtgtttatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaattttct 118856  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 5777111 - 5777166
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 348  Q
    ||||||||||| ||||||||||||| |||||| | || |||||||||||| |||||    
T  5777111 tgttgttgttggaattgagattgggttgtttgagattgttgaaaaggttgttgttg 5777166  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 45436181 - 45436225
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 338  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  45436181 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 45436225  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 7487145 - 7487188
Alignment:
Q  304 aaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 348  Q
    |||||||||||||||||||| ||| || |||||||||||||||||    
T  7487145 aaattgagattggggtgtttatgg-ttatgaaaaggttgatgttg 7487188  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 385
Target Start/End: Original strand, 24546535 - 24546579
Alignment:
Q  341 tgatgttgctgatattgtaatgaagaaatgttcttgttgttgatg 385  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  24546535 tgatgttgctggtattgtgatgaagaaatgttcttgttgttgatg 24546579  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 4030718 - 4030751
Alignment:
Q  19 gacatcatcaaaattatatatgttaaatagttta 52  Q
    |||||||||||||||||| |||||||||||||||    
T  4030718 gacatcatcaaaattatacatgttaaatagttta 4030751  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 3978439 - 3978364
Alignment:
Q  295 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 369  Q
    ||||||||||||||||| ||| | ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  3978439 ttgttgttgaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 3978364  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 338
Target Start/End: Original strand, 38961773 - 38961817
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaag 338  Q
    |||||||||||||||||||||| |||| ||||||||| ||||||||    
T  38961773 tgttgttgttgaaattgagatt-gggtatttgtggttgttgaaaag 38961817  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 38407199 - 38407275
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 369  Q
    |||||||||||||||||||||| ||||| || ||| || ||||||||||||||||| || | ||||| ||||||||||    
T  38407199 tgttgttgttgaaattgagattagggtgattatgg-ttatgaaaaggttgatgttgttgctaattgtgatgaagaaat 38407275  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 19279339 - 19279392
Alignment:
Q  295 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttg 348  Q
    |||||||| |||||||| ||| | ||||||||||| |||||||||||| |||||    
T  19279339 ttgttgttaaaattgagtttgagatgtttgtggttgttgaaaaggttgttgttg 19279392  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 25154619 - 25154668
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttg 342  Q
    ||||||||||| | |||||||||| |||||||||||| ||||||| ||||    
T  25154619 tgttgttgttggatttgagattggagtgtttgtggttgttgaaaaagttg 25154668  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 26791090 - 26791166
Alignment:
Q  293 tgttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 369  Q
    ||||| ||||||||||||||| ||| ||||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  26791090 tgttgctgttgaaattgagat-gggatgtttgtggttgttgaaaaggttgttgttgttgttcatggtaatgaagaaat 26791166  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 295 - 369
Target Start/End: Complemental strand, 34039702 - 34039627
Alignment:
Q  295 ttgttgttgaaattgagattggggtgtttgtggtttttgaaaaggttgatgttgctgat-attgtaatgaagaaat 369  Q
    ||||||||||||||| ||||||  | ||||||||| |||||||||||| ||||| || | || |||||||||||||    
T  34039702 ttgttgttgaaattgggattggaatatttgtggttgttgaaaaggttgttgttgttgttgatggtaatgaagaaat 34039627  T

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