View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1128_high_10 (Length: 364)
Name: NF1128_high_10
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_high_10 |
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| [»] scaffold0633 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 41650073 - 41650397
Alignment:
| Q |
30 |
gatataaggagaaaaattcatgagaatcctgaactgagttatcaagaatt-aaaactagtaagcttatacgaacaaaattggatgaattaggtgtcccat |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41650073 |
gatataaggagaaaaattcatgagaatcctgaactgagttatcaagaatttaaaactagtaagcttatacgaacaaaattggatgaattaggtgtcccat |
41650172 |
T |
|
| Q |
129 |
ataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatgca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41650173 |
ataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatgca |
41650272 |
T |
|
| Q |
229 |
ggtatgtctacattttttcctgagtgttttggtttccaattatggatttttatcttggttttgaatgtaacatgttttaaatgaagttttcaagagaatt |
328 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41650273 |
ggtatgtctacattttttcctgagtgttttggtttccaattatgggtttttatcttggttttgaatgtaacatgttttaaatgaagttttcaagagaatt |
41650372 |
T |
|
| Q |
329 |
ttctaacaactttatcgacgttcat |
353 |
Q |
| |
|
||||||||||||||| ||||||||| |
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|
| T |
41650373 |
ttctaacaactttattgacgttcat |
41650397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 32 - 346
Target Start/End: Complemental strand, 43228084 - 43227769
Alignment:
| Q |
32 |
tataaggagaaaaattcatgagaatcctgaactgagttatcaagaattaaa-actagtaagcttatacgaacaaaattggatgaattaggtgtcccatat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| || ||||| | |||| |
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|
| T |
43228084 |
tataaggagaaaaattcatgagaatcctgaactgagttatcaagaatttgagactagtaagcttataagaacaaaattggatgagttgggtgttcaatat |
43227985 |
T |
|
| Q |
131 |
aaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatgcagg |
230 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| |
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|
| T |
43227984 |
aaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgttgctcttagagctgacatggatgctcttctcatgcagg |
43227885 |
T |
|
| Q |
231 |
tatgtctacattttttcc-tgagtgttttggtttccaattatggatttttatcttggttttgaatgtaacatgttttaaatgaagttttcaagagaattt |
329 |
Q |
| |
|
| || | |||||||| |||||||||| |||| || || |||| ||||||||||||||| || | |||||||||||||||||||||||||||||||| |
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|
| T |
43227884 |
tctgcattttttttttccttgagtgttttagttttcagttgtgga-ttttatcttggttttctatatcacatgttttaaatgaagttttcaagagaattt |
43227786 |
T |
|
| Q |
330 |
tctaacaactttatcga |
346 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
43227785 |
tctaacaattttatcga |
43227769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 32 - 231
Target Start/End: Complemental strand, 43206574 - 43206374
Alignment:
| Q |
32 |
tataaggagaaaaattcatgagaatcctgaactgagttatcaagaattaaa-actagtaagcttatacgaacaaaattggatgaattaggtgtcccatat |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| || ||||| | |||| |
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|
| T |
43206574 |
tataaggagaaaaattcatgagaatcctgaactgagttatcaagaatttgagactagtaagcttataagaacaaaattggatgagttgggtgttcaatat |
43206475 |
T |
|
| Q |
131 |
aaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatgcagg |
230 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||| |
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|
| T |
43206474 |
aaacatccagttgcagttacaggtgttattggttacataggaactggtcttcctccttttgttgctcttagagctgatatggatgctcttcttattcagg |
43206375 |
T |
|
| Q |
231 |
t |
231 |
Q |
| |
|
| |
|
|
| T |
43206374 |
t |
43206374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 43224285 - 43224056
Alignment:
| Q |
30 |
gatataaggagaaaaattcatgagaatcctgaactgagttatcaagaattaaa-actagtaagcttatacgaacaaaattggatgaattaggtgtcccat |
128 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||| | ||||| | || |||||||||||| ||||| ||||||||||||||||||| | || |
|
|
| T |
43224285 |
gatataaggaggaagattcatgagaatcctgaacttggttatgaggaatttgagaccagtaagcttataagaacagaattggatgaattaggtgttcaat |
43224186 |
T |
|
| Q |
129 |
ataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatgca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||| |
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|
| T |
43224185 |
ataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgacatggatgctcttctcatgca |
43224086 |
T |
|
| Q |
229 |
ggtatgtctacattttttcctgagtgttttggttt |
263 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| |
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|
| T |
43224085 |
g----gtctacatttttt-ctgagtgttttggttt |
43224056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 41654613 - 41654816
Alignment:
| Q |
30 |
gatataaggagaaaaattcatgagaatcctgaactgagttatcaagaattaaa-actagtaagcttatacgaacaaaattggatgaattaggtgtcccat |
128 |
Q |
| |
|
||||||||||| || |||||||||||||||||||| ||||| ||||||| | || |||||||||||| ||||||||||||||||||| ||||| ||| |
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|
| T |
41654613 |
gatataaggaggaagattcatgagaatcctgaacttggttatgaagaatttgagaccagtaagcttataagaacaaaattggatgaattgggtgttacat |
41654712 |
T |
|
| Q |
129 |
ataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatgca |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||| |
|
|
| T |
41654713 |
ataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtcgctctcagagctgaaatggatgctcttcttatgca |
41654812 |
T |
|
| Q |
229 |
ggta |
232 |
Q |
| |
|
|||| |
|
|
| T |
41654813 |
ggta |
41654816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 43213550 - 43213347
Alignment:
| Q |
30 |
gatataaggagaaaaattcatgagaatcctgaactgagttatcaagaatta-aaactagtaagcttatacgaacaaaattggatgaattaggtgtcccat |
128 |
Q |
| |
|
||||||||||| || |||||||||||||||||| | ||||| ||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
43213550 |
gatataaggaggaagattcatgagaatcctgaagttggttatgaagaatttgaaaccagtaagcttataagaacaaaattagatgaattaggtgtcccat |
43213451 |
T |
|
| Q |
129 |
ataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctcttctcatgca |
228 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||| |
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|
| T |
43213450 |
ataaacatccagttgtagtgacaggtgttattggttacataggaactggtcttcctccttttgtcgctcttagagctgagatggatgctcttcttatgca |
43213351 |
T |
|
| Q |
229 |
ggta |
232 |
Q |
| |
|
|||| |
|
|
| T |
43213350 |
ggta |
43213347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 220
Target Start/End: Complemental strand, 5073719 - 5073627
Alignment:
| Q |
128 |
tataaacatccagttgcagtgacaggtgttattggttacataggaactggtcttcctccttttgtagctctcagagctgatatggatgctctt |
220 |
Q |
| |
|
|||||| ||||||||||| | || ||||| ||||||| |||||||||||| | |||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
5073719 |
tataaatatccagttgcaatcactggtgtcattggtttcataggaactggattgtctccttttgttgctttaagagctgatatggatgctctt |
5073627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 13267906 - 13267942
Alignment:
| Q |
296 |
taacatgttttaaatgaagttttcaagagaattttct |
332 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
13267906 |
taacatgttttaaatgaagttttcaaaggaattttct |
13267942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0633 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0633
Description:
Target: scaffold0633; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 8943 - 8979
Alignment:
| Q |
296 |
taacatgttttaaatgaagttttcaagagaattttct |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
8943 |
taacatgttttaaatgaagttttcaagaaaattttct |
8979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 41666286 - 41666250
Alignment:
| Q |
296 |
taacatgttttaaatgaagttttcaagagaattttct |
332 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41666286 |
taacatgttttaaatgaagttttcaagaaaattttct |
41666250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 332
Target Start/End: Original strand, 43365909 - 43365948
Alignment:
| Q |
293 |
atgtaacatgttttaaatgaagttttcaagagaattttct |
332 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
43365909 |
atgtaacatgttttaaatgaagtttttaagggaattttct |
43365948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 330
Target Start/End: Complemental strand, 49888358 - 49888328
Alignment:
| Q |
300 |
atgttttaaatgaagttttcaagagaatttt |
330 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
49888358 |
atgttttaaatgaagttttcaagagaatttt |
49888328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 300 - 355
Target Start/End: Original strand, 25189514 - 25189569
Alignment:
| Q |
300 |
atgttttaaatgaagttttcaagagaattttctaacaactttatcgacgttcatct |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||| |||||| | |||||||| |
|
|
| T |
25189514 |
atgttttaaatgaagttttcaagagaatttcgttacaattttatcaatgttcatct |
25189569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 329
Target Start/End: Complemental strand, 39450832 - 39450803
Alignment:
| Q |
300 |
atgttttaaatgaagttttcaagagaattt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39450832 |
atgttttaaatgaagttttcaagagaattt |
39450803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 37327506 - 37327454
Alignment:
| Q |
303 |
ttttaaatgaagttttcaagagaattttctaacaactttatcgacgttcatct |
355 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| |||||||| ||| |||| |
|
|
| T |
37327506 |
ttttaaatgaagttttcaagagaattttgttgcaattttatcgatgttaatct |
37327454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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