View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1128_high_2 (Length: 570)

Name: NF1128_high_2
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1128_high_2
NF1128_high_2
[»] chr2 (11 HSPs)
chr2 (12-455)||(16656596-16657051)
chr2 (20-150)||(12257918-12258048)
chr2 (14-109)||(43626329-43626424)
chr2 (15-149)||(12235767-12235901)
chr2 (23-149)||(12244410-12244536)
chr2 (23-149)||(7543246-7543372)
chr2 (23-150)||(14705431-14705558)
chr2 (12-162)||(16661062-16661212)
chr2 (23-108)||(12000343-12000428)
chr2 (509-543)||(16657047-16657081)
chr2 (201-280)||(31964511-31964589)
[»] chr4 (6 HSPs)
chr4 (8-159)||(9323056-9323207)
chr4 (8-159)||(9377535-9377686)
chr4 (8-159)||(9335028-9335178)
chr4 (23-120)||(35133452-35133549)
chr4 (53-159)||(30776076-30776182)
chr4 (202-281)||(315691-315769)
[»] chr7 (30 HSPs)
chr7 (29-130)||(7876847-7876948)
chr7 (15-120)||(8660242-8660347)
chr7 (6-114)||(3148375-3148483)
chr7 (14-129)||(8647690-8647805)
chr7 (14-120)||(1302309-1302415)
chr7 (8-149)||(10492993-10493134)
chr7 (8-149)||(13332142-13332283)
chr7 (14-149)||(6790379-6790514)
chr7 (8-159)||(8668424-8668575)
chr7 (19-149)||(8602703-8602833)
chr7 (19-130)||(8591386-8591497)
chr7 (23-130)||(8582651-8582758)
chr7 (14-149)||(17261361-17261496)
chr7 (12-150)||(27829341-27829479)
chr7 (32-120)||(8610662-8610750)
chr7 (20-130)||(8635503-8635613)
chr7 (23-120)||(8572588-8572685)
chr7 (12-157)||(8630189-8630334)
chr7 (23-118)||(8546675-8546770)
chr7 (32-116)||(8104067-8104151)
chr7 (14-149)||(17269069-17269204)
chr7 (14-96)||(8655371-8655453)
chr7 (20-130)||(29576993-29577103)
chr7 (20-149)||(8538773-8538902)
chr7 (53-158)||(8584573-8584678)
chr7 (20-149)||(29581169-29581298)
chr7 (17-120)||(8577287-8577390)
chr7 (81-130)||(8382295-8382344)
chr7 (32-116)||(8016309-8016393)
chr7 (50-120)||(8568836-8568906)
[»] chr1 (4 HSPs)
chr1 (14-121)||(15596056-15596163)
chr1 (2-159)||(4677526-4677683)
chr1 (14-114)||(34465246-34465346)
chr1 (187-281)||(36772557-36772650)
[»] chr5 (3 HSPs)
chr5 (14-149)||(42554185-42554320)
chr5 (20-159)||(28220906-28221045)
chr5 (197-279)||(42774608-42774687)
[»] chr8 (2 HSPs)
chr8 (14-149)||(43745793-43745925)
chr8 (29-129)||(12529857-12529957)
[»] chr6 (3 HSPs)
chr6 (69-159)||(28911273-28911363)
chr6 (35-106)||(11159652-11159723)
chr6 (18-76)||(11198234-11198292)
[»] scaffold0211 (1 HSPs)
scaffold0211 (201-280)||(15840-15918)
[»] scaffold0284 (1 HSPs)
scaffold0284 (201-280)||(8407-8487)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 455
Target Start/End: Original strand, 16656596 - 16657051
Alignment:
Q  12 acagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaa 111  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  16656596 acagagcagagatcatacacaatgaccagggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgctgctaagaa 16656695  T
Q  112 tcaggctgccgctaacccacaaaacaccatctttggtatgtttctattctcgagtatcgtatttctgggccggcccaataatttttagggttaatcaagt 211  Q
    ||| | |||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||    
T  16656696 tcaagttgccgctaacccacaaaacaccatctttggtatgtttctattctcga----------------ccggcccaataatttttagggttaatcaagt 16656779  T
Q  212 aaatggtccctctgataatatccataatttcatttttattcctacaaataaaaatcgcattttttagtttataacattttcctta--------------- 296  Q
    ||||||||| | | |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||                   
T  16656780 aaatggtccatgtaataatatccataatttcatttttagtcctacaaataaaaattgcattttttagtttataacattttctttagtattttaaggacca 16656879  T
Q  297 ------cagaaagaagttttgtaaactaaaaatgttgatgaaaaatgagttgtaatatatggtccaaacaaatataactgaatctaatgannnnnnnngt 390  Q
          |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |    ||||||||| ||||||||||||         |    
T  16656880 aaaacgcagacagaagttttgtaaactaaaaatgttgatgaaaaatgagttgtaatatatgggc----caaatataagtgaatctaatgatttttttttt 16656975  T
Q  391 t-----------ttgttattattatagttaatattattattacagctttaaatagcggttgtagtcatgtcatgat 455  Q
    |           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16656976 ttgttgttgttgttgttattattatagttaatattattattacggctttaaatagcggttgtagtcatgtcatgat 16657051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 20 - 150
Target Start/End: Original strand, 12257918 - 12258048
Alignment:
Q  20 gagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctg 119  Q
    |||||||| ||||| || ||||||||||||||||| ||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||    
T  12257918 gagatcattcacaacgatcaaggaaacagaacaacgccttcttgtgttgcttttactaaagatcaaaggttgattggtgatgctgctaagaatcaagctg 12258017  T
Q  120 ccgctaacccacaaaacaccatctttggtat 150  Q
    | || ||||| ||| ||||  ||||||||||    
T  12258018 ctgccaaccctcaacacactgtctttggtat 12258048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 43626424 - 43626329
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaag 109  Q
    ||||||||||| || ||||||||||||||||||||||| ||||||||||||||| |||||||| | || |||||||||||||||||||||||||||    
T  43626424 agagtagagattatccacaatgaccaaggaaacagaactacaccttcttttgtttctttcactaaggaccaaaggttgattggtgatgctgctaag 43626329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 12235901 - 12235767
Alignment:
Q  15 gagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatca 114  Q
    |||| |||||||| ||||| || ||||| || |||||||| ||||||||||||||||||||  |  |||| |||||||||||||||||||||||||||||    
T  12235901 gagttgagatcattcacaacgatcaaggcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgctgctaagaatca 12235802  T
Q  115 ggctgccgctaacccacaaaacaccatctttggta 149  Q
     |||||  | ||||| ||||||||| |||||||||    
T  12235801 agctgcttccaacccgcaaaacaccgtctttggta 12235767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 23 - 149
Target Start/End: Original strand, 12244410 - 12244536
Alignment:
Q  23 atcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgccg 122  Q
    ||||| ||||| || || || ||||||||||||||||||| ||||||||||||| | ||||||||||| ||||||||||||||||| ||||| ||||| |    
T  12244410 atcattcacaacgatcagggcaacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgctgctaaaaatcaagctgctg 12244509  T
Q  123 ctaacccacaaaacaccatctttggta 149  Q
    ||||| | ||||||||  |||||||||    
T  12244510 ctaactctcaaaacactgtctttggta 12244536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 7543372 - 7543246
Alignment:
Q  23 atcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgccg 122  Q
    ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||  |  |||| |||||||| ||||||  |||||||||||| |||||      
T  7543372 atcattcacaacgaccaaggcaacagaacaacaccttcttttgttgctttcaccgaaaatcagaggttgatcggtgataatgctaagaatcaagctgctt 7543273  T
Q  123 ctaacccacaaaacaccatctttggta 149  Q
    | ||||| ||||||||  |||||||||    
T  7543272 ccaaccctcaaaacactgtctttggta 7543246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 14705558 - 14705431
Alignment:
Q  23 atcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgccg 122  Q
    ||||| ||||| || ||||| || |||||||| ||||||||||||||||||||  |  ||||  |||||||||||||||||||||||||||| ||||| |    
T  14705558 atcattcacaacgatcaaggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgctgctaagaatcaagctgctg 14705459  T
Q  123 ctaacccacaaaacaccatctttggtat 150  Q
    | ||||| | ||||||  ||||||||||    
T  14705458 ccaaccctcgaaacactgtctttggtat 14705431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 16661062 - 16661212
Alignment:
Q  12 acagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaa 111  Q
    ||||||| ||||| || ||||| ||  |||| |||| ||  |||||||||||||||||||| ||| ||| |||||||||| | |||| |||||||||| |    
T  16661062 acagagttgagattatccacaacgatgaaggcaacaaaattacaccttcttttgttgcttttactgatgctcaaaggttggtcggtggtgctgctaagga 16661161  T
Q  112 tcaggctgccgctaacccacaaaacaccatctttggtatgtttctattctc 162  Q
    ||| |||||    ||||||||||||||| |||||| ||| |||||||||||    
T  16661162 tcaagctgctatcaacccacaaaacaccgtctttgctatatttctattctc 16661212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 108
Target Start/End: Complemental strand, 12000428 - 12000343
Alignment:
Q  23 atcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaa 108  Q
    ||||| ||||| || ||||| |||| || ||||||||||| ||||||||||||| |  ||||||||||  ||||||||||||||||    
T  12000428 atcattcacaacgatcaaggcaacaaaataacaccttcttgtgttgctttcactgaaaatcaaaggtttgttggtgatgctgctaa 12000343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 543
Target Start/End: Original strand, 16657047 - 16657081
Alignment:
Q  509 atgatacgattttactattattattgttattgttg 543  Q
    |||||||||||||||||||||||||||||||||||    
T  16657047 atgatacgattttactattattattgttattgttg 16657081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 31964589 - 31964511
Alignment:
Q  201 gttaatcaagtaaatggtccctctgataatatccataatttcatttttattcc-tacaaataaaaatcgcattttttagtt 280  Q
    |||||||||||||||||||||| |   |||||||| ||||||||||||| ||| |||||| | |||||||| |||||||||    
T  31964589 gttaatcaagtaaatggtccctat--aaatatccagaatttcatttttagtccatacaaaaataaatcgcactttttagtt 31964511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 7e-35; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 9323056 - 9323207
Alignment:
Q  8 caccacagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgcta 107  Q
    ||||| ||||| ||||| || |||||||| ||||||||| |||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||    
T  9323056 caccaaagagttgagattattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgcta 9323155  T
Q  108 agaatcaggctgccgctaacccacaaaacaccatctttggtatgtttctatt 159  Q
    |||||||  ||||  |||||||  ||||||| ||||||||||  ||||||||    
T  9323156 agaatcaatctgctactaaccctgaaaacactatctttggtaaatttctatt 9323207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 9377535 - 9377686
Alignment:
Q  8 caccacagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgcta 107  Q
    ||||| ||||| ||||| || |||||||| ||||||||| |||||||||||||||||||||||||||   |||| |||||||||||||||||||||||||    
T  9377535 caccaaagagttgagattattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgctgcta 9377634  T
Q  108 agaatcaggctgccgctaacccacaaaacaccatctttggtatgtttctatt 159  Q
    |||||||  ||||  |||||||  ||||||| ||||||||||  ||||||||    
T  9377635 agaatcaatctgctactaaccctgaaaacactatctttggtaaatttctatt 9377686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 9335028 - 9335178
Alignment:
Q  8 caccacagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgcta 107  Q
    ||||| ||||| ||||| || |||||||| ||||||||| |||||||||||||||||||||||||||   |||| |||||||||| ||||||||||||||    
T  9335028 caccaaagagttgagattattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttga-tggtgatgctgcta 9335126  T
Q  108 agaatcaggctgccgctaacccacaaaacaccatctttggtatgtttctatt 159  Q
    |||||||  ||||  |||||||  ||||||| ||||||||||  ||||||||    
T  9335127 agaatcaatctgctactaaccctgaaaacactatctttggtaaatttctatt 9335178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 35133549 - 35133452
Alignment:
Q  23 atcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgc 120  Q
    ||||| ||||| || ||| | |||| |||||||||||||| | ||||||||||| | |||||||||||||| |||||||||||||||||||| |||||    
T  35133549 atcattcacaacgatcaaagcaacaaaacaacaccttcttgtattgctttcactaaggatcaaaggttgatcggtgatgctgctaagaatcaagctgc 35133452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 30776182 - 30776076
Alignment:
Q  53 acaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgccgctaacccacaaaacaccatctttggtatgt 152  Q
    |||||||||||||||||||||||| ||| |||||||||| | |||| |||||||||| | ||||||||    ||||| ||||||||  |||||||||  |    
T  30776182 acaccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgctgctaaggaccaggctgctatcaaccctcaaaacactgtctttggtaaat 30776083  T
Q  153 ttctatt 159  Q
    |||||||    
T  30776082 ttctatt 30776076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 281
Target Start/End: Original strand, 315691 - 315769
Alignment:
Q  202 ttaatcaagtaaatggtccctctgataatatccataatttcatttttattcc-tacaaataaaaatcgcattttttagttt 281  Q
    ||||| ||||||||||||||| | |  ||||||| ||||||||||||| ||| |||||| | |||||||| ||||||||||    
T  315691 ttaattaagtaaatggtccctataa--atatccaaaatttcatttttagtccatacaaaaataaatcgcactttttagttt 315769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 7876847 - 7876948
Alignment:
Q  29 cacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgccgctaacc 128  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| || |||||||||||| ||||||    
T  7876847 cacaatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattggtgatgctgccaaaaatcaggctgcctctaacc 7876946  T
Q  129 ca 130  Q
    ||    
T  7876947 ca 7876948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 8660347 - 8660242
Alignment:
Q  15 gagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatca 114  Q
    |||| ||||||||  |||| ||||||||||||| |||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  8660347 gagtcgagatcatctacaacgaccaaggaaacaaaacaacaccttcatttgttgctttcactgacgatcaaaggttgattggtgatgctgctaagaatca 8660248  T
Q  115 ggctgc 120  Q
    ||||||    
T  8660247 ggctgc 8660242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 6 - 114
Target Start/End: Complemental strand, 3148483 - 3148375
Alignment:
Q  6 agcaccacagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgc 105  Q
    ||||| ||||||| ||||| || |||||||||||||| |||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  3148483 agcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgctgc 3148384  T
Q  106 taagaatca 114  Q
    |||||||||    
T  3148383 taagaatca 3148375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 129
Target Start/End: Complemental strand, 8647805 - 8647690
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatc 113  Q
    ||||| ||||| || |||||||| |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||| ||||| ||||    
T  8647805 agagttgagattattcacaatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgccgctaaaaatc 8647706  T
Q  114 aggctgccgctaaccc 129  Q
    |||||||  |||||||    
T  8647705 aggctgcttctaaccc 8647690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 14 - 120
Target Start/End: Complemental strand, 1302415 - 1302309
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatc 113  Q
    ||||||||||||||  |||| |||||||| |||| ||||||||| |||||||||||||||||  |||||||||||||||| |||||||||||||||||||    
T  1302415 agagtagagatcatctacaacgaccaaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtgatgctgctaagaatc 1302316  T
Q  114 aggctgc 120  Q
    |||||||    
T  1302315 aggctgc 1302309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 10492993 - 10493134
Alignment:
Q  8 caccacagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgcta 107  Q
    ||||| ||||| || || || |||||||| |||||||| ||||| ||||||||||||||||||||||   |||||||||||||||| |||||||||||||    
T  10492993 caccaaagagttgaaattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgctgcta 10493092  T
Q  108 agaatcaggctgccgctaacccacaaaacaccatctttggta 149  Q
    |||||||  ||||| |||||||  |||||||| |||||||||    
T  10493093 agaatcaatctgccactaaccctgaaaacaccgtctttggta 10493134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 13332142 - 13332283
Alignment:
Q  8 caccacagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgcta 107  Q
    ||||| ||||| ||||| || |||||||| |||||||| ||||| ||||||||||||||||||||||   |||||||||| ||||||||||||||||| |    
T  13332142 caccaaagagttgagattattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaagattgattggtgatgctgcca 13332241  T
Q  108 agaatcaggctgccgctaacccacaaaacaccatctttggta 149  Q
    |||||||  ||||| |||||||  ||||||| ||||||||||    
T  13332242 agaatcaatctgccactaaccctgaaaacactatctttggta 13332283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 6790514 - 6790379
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatc 113  Q
    ||||| ||||| || |||||||||||||| |||| ||| |||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||| |||    
T  6790514 agagttgagattattcacaatgaccaaggtaacaaaaccacaccttcttttgttgctttcaccgatgaccaaaggttgatcggtgatgctgctaagtatc 6790415  T
Q  114 aggctgccgctaacccacaaaacaccatctttggta 149  Q
    | |||||| | ||||| |||||||| ||||| ||||    
T  6790414 aagctgccaccaacccgcaaaacactatcttcggta 6790379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 159
Target Start/End: Complemental strand, 8668575 - 8668424
Alignment:
Q  8 caccacagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgcta 107  Q
    ||||| ||||| ||||| || |||||||| ||||||||| ||| |||||||||||||||||||||||   |||| |||||||||||||| ||||||||||    
T  8668575 caccaaagagttgagattattcacaatgatcaaggaaaccgaataacaccttcttttgttgctttcaacaatgaacaaaggttgattggcgatgctgcta 8668476  T
Q  108 agaatcaggctgccgctaacccacaaaacaccatctttggtatgtttctatt 159  Q
    |||||||  ||||  |||||||  ||||||| ||||||||||  ||||||||    
T  8668475 agaatcaatctgctactaaccctgaaaacactatctttggtaaatttctatt 8668424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 8602833 - 8602703
Alignment:
Q  19 agagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggct 118  Q
    |||||| || |||||||| |||||||||||||| || ||||||||||||||||| ||| ||||| |||||||||| ||||||||||| || |||||||||    
T  8602833 agagattattcacaatgatcaaggaaacagaactactccttcttttgttgcttttactgatgataaaaggttgatcggtgatgctgccaaaaatcaggct 8602734  T
Q  119 gccgctaacccacaaaacaccatctttggta 149  Q
    ||  ||||||||   ||||| ||||||||||    
T  8602733 gcttctaacccagtcaacactatctttggta 8602703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 19 - 130
Target Start/End: Complemental strand, 8591497 - 8591386
Alignment:
Q  19 agagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggct 118  Q
    |||||| || |||||||| |||||||| ||||  |||||||||||||||||||| ||| |||||||||||||||||||||||||||| || || ||||||    
T  8591497 agagattattcacaatgatcaaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggttgattggtgatgctgcaaaaaaccaggct 8591398  T
Q  119 gccgctaaccca 130  Q
    ||  ||||||||    
T  8591397 gcttctaaccca 8591386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 8582758 - 8582651
Alignment:
Q  23 atcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgccg 122  Q
    |||||||||||||| |||||||||| |||||||||||||| ||||||||| ||| ||  |||||| ||||||||||||||||| || ||||| |||||      
T  8582758 atcatacacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcaaagattgattggtgatgctgccaaaaatcaagctgctt 8582659  T
Q  123 ctaaccca 130  Q
    ||||||||    
T  8582658 ctaaccca 8582651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 17261496 - 17261361
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatc 113  Q
    ||||| |||||||| |||||||| |||||||||| ||  || |||||||||||||||||  || | ||| |||||||||| |||||||| ||||||||||    
T  17261496 agagttgagatcattcacaatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgccgctaagaatc 17261397  T
Q  114 aggctgccgctaacccacaaaacaccatctttggta 149  Q
    | ||||||   |||||| |||||||| |||||||||    
T  17261396 aagctgccataaacccagaaaacaccgtctttggta 17261361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 27829341 - 27829479
Alignment:
Q  12 acagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaa 111  Q
    ||||||| ||||| || |||||||| ||||| ||||  ||||||||||||| ||||||||||||  |  | || ||||||||||||||||||||||||||    
T  27829341 acagagtggagattattcacaatgaacaaggcaacaagacaacaccttcttgtgttgctttcacggacaaacagaggttgattggtgatgctgctaagaa 27829440  T
Q  112 tcaggctgccgctaacccacaaaacaccatctttggtat 150  Q
     || |||||  | ||||| |||||||| |||||||||||    
T  27829441 ccaagctgcttccaaccctcaaaacactatctttggtat 27829479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 8610750 - 8610662
Alignment:
Q  32 aatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgc 120  Q
    ||||| |||||||||||||| || |||||||||||||||||| ||  ||||||||||||||| |||||||||||||| ||||| |||||    
T  8610750 aatgagcaaggaaacagaaccactccttcttttgttgctttctctggtgatcaaaggttgataggtgatgctgctaaaaatcaagctgc 8610662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 8635503 - 8635613
Alignment:
Q  20 gagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctg 119  Q
    |||||||| |||||||| ||||| |||||||  |||||||||| ||||||||||||| | |  ||||||||||||||||||||||| || || ||||||     
T  8635503 gagatcatccacaatgagcaagggaacagaatcacaccttcttgtgttgctttcactgacgcacaaaggttgattggtgatgctgccaaaaaccaggctt 8635602  T
Q  120 ccgctaaccca 130  Q
    || ||||||||    
T  8635603 cctctaaccca 8635613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 8572685 - 8572588
Alignment:
Q  23 atcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgc 120  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||| ||| ||  |||||| ||||| ||||||||||| || ||||| |||||    
T  8572685 atcatacacaatgaccaaggaaacagaacaactccctcttgtgttgcttttactaattctcaaagattgatcggtgatgctgccaaaaatcaagctgc 8572588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 8630334 - 8630189
Alignment:
Q  12 acagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaa 111  Q
    ||||||| ||||| || ||||||||  |||| || | ||  |||||||| || |||||||| ||  |||||||||||||| |||||| |||||||||| |    
T  8630334 acagagttgagattattcacaatgatgaaggcaataaaatcacaccttccttcgttgcttttaccgatgatcaaaggttggttggtggtgctgctaagga 8630235  T
Q  112 tcaggctgccgctaacccacaaaacaccatctttggtatgtttcta 157  Q
    ||||||||||   ||||||||||||||  |||||||||| ||||||    
T  8630234 tcaggctgccatcaacccacaaaacactgtctttggtatatttcta 8630189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 118
Target Start/End: Complemental strand, 8546770 - 8546675
Alignment:
Q  23 atcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggct 118  Q
    ||||| |||||||| |||||||||| |||||||||||||| ||||||||||||  ||   |||||| |||||||||||||||| || |||||||||    
T  8546770 atcattcacaatgatcaaggaaacaaaacaacaccttcttgtgttgctttcacaaattcccaaaggctgattggtgatgctgccaaaaatcaggct 8546675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 32 - 116
Target Start/End: Complemental strand, 8104151 - 8104067
Alignment:
Q  32 aatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcagg 116  Q
    ||||| ||||| |||||||| ||||| |||| ||||||||||||| ||  | |||||||||| ||||||||||||||||||||||    
T  8104151 aatgatcaagggaacagaacgacaccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatcagg 8104067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 17269204 - 17269069
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatc 113  Q
    ||||| ||||| ||||||||||| ||||| |||| ||| || || ||||||||||||||  || | ||| ||||||| || |||||| | ||||||||||    
T  17269204 agagttgagattatacacaatgatcaaggcaacaaaactactccgtcttttgttgcttttgctaaagatgaaaggtttatcggtgattccgctaagaatc 17269105  T
Q  114 aggctgccgctaacccacaaaacaccatctttggta 149  Q
    | ||||||   |||||| |||||||| |||||||||    
T  17269104 aagctgccatgaacccagaaaacaccgtctttggta 17269069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 14 - 96
Target Start/End: Complemental strand, 8655453 - 8655371
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattgg 96  Q
    ||||| ||||| || |||||||| ||||| || ||||| ||||||||| |||||||||||||| || ||||||||||||||||    
T  8655453 agagttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattgg 8655371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 20 - 130
Target Start/End: Original strand, 29576993 - 29577103
Alignment:
Q  20 gagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctg 119  Q
    |||||||| |||||||| ||||| || ||||| ||||||||| |||| ||||||||| ||   | |||||| |||||| |||||||||| ||||||||||    
T  29576993 gagatcatccacaatgatcaaggcaatagaaccacaccttctgttgtagctttcactgattcactaaggttaattggtaatgctgctaaaaatcaggctg 29577092  T
Q  120 ccgctaaccca 130  Q
    || | ||||||    
T  29577093 cctcaaaccca 29577103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 8538902 - 8538773
Alignment:
Q  20 gagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctg 119  Q
    |||||||||||||| || |||||||||| ||| |||||||||| ||||| ||| | | ||  |||| | ||||||||||||||||| || ||||| |||     
T  8538902 gagatcatacacaacgatcaaggaaacaaaaccacaccttcttgtgttggttttagtaattctcaacgattgattggtgatgctgccaaaaatcaagctt 8538803  T
Q  120 ccgctaacccacaaaacaccatctttggta 149  Q
    || ||||||||  ||||||  |||||||||    
T  8538802 cctctaacccaacaaacactgtctttggta 8538773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 158
Target Start/End: Original strand, 8584573 - 8584678
Alignment:
Q  53 acaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgccgctaacccacaaaacaccatctttggtatgt 152  Q
    |||||||| ||||||||||| ||  |||||||||||||| |||||| |||||||||| ||||||||||    |||||| | |||||  |||||||||| |    
T  8584573 acaccttcctttgttgcttttaccgatgatcaaaggttggttggtggtgctgctaaggatcaggctgctatcaacccagagaacactgtctttggtatat 8584672  T
Q  153 ttctat 158  Q
    ||||||    
T  8584673 ttctat 8584678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 29581169 - 29581298
Alignment:
Q  20 gagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctg 119  Q
    |||||||| |||||||| ||||| ||  |||| ||||||||| |||| ||||||||| |    |  ||||||||| || |||||||||| ||||||||||    
T  29581169 gagatcatccacaatgatcaaggcaatggaaccacaccttctgttgtagctttcactgactcactgaggttgattagtaatgctgctaaaaatcaggctg 29581268  T
Q  120 ccgctaacccacaaaacaccatctttggta 149  Q
    |||| ||||||  |||||| ||||||||||    
T  29581269 ccgcaaacccaacaaacactatctttggta 29581298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 8577390 - 8577287
Alignment:
Q  17 gtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcagg 116  Q
    ||||| || ||||||||||| |||||||||||||| || ||||||| ||||||||| ||  ||  |||||| |||||||| |||||||| || ||||| |    
T  8577390 gtagaaattatacacaatgatcaaggaaacagaaccactccttcttgtgttgcttttaccaattctcaaagattgattggcgatgctgccaaaaatcaag 8577291  T
Q  117 ctgc 120  Q
    ||||    
T  8577290 ctgc 8577287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 8382295 - 8382344
Alignment:
Q  81 atcaaaggttgattggtgatgctgctaagaatcaggctgccgctaaccca 130  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||||||||    
T  8382295 atcaaaggttggttggtgatgctgctaagaatcagactgcctctaaccca 8382344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 8016309 - 8016393
Alignment:
Q  32 aatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcagg 116  Q
    ||||| ||||| ||| |||| || || |||| ||||||||||||| ||  | |||||||||| ||||||||||||||||||||||    
T  8016309 aatgatcaagggaaccgaacgacgccgtcttatgttgctttcactgatagtgaaaggttgatcggtgatgctgctaagaatcagg 8016393  T

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Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 8568906 - 8568836
Alignment:
Q  50 acaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgc 120  Q
    ||||||||||||| ||||||||||||| |   |||||| ||||||||||||||||| || ||||| |||||    
T  8568906 acaacaccttcttgtgttgctttcactaaatctcaaagattgattggtgatgctgccaaaaatcaagctgc 8568836  T

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Target: chr1 (Bit Score: 72; Significance: 2e-32; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 121
Target Start/End: Complemental strand, 15596163 - 15596056
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatc 113  Q
    ||||| ||||| || ||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||    
T  15596163 agagtcgagattatccacaatgaccaaggaaacagaattacaccttcttttgtttctttcactaatgatcaaaggttgattggtgatgctgctaagagtc 15596064  T
Q  114 aggctgcc 121  Q
    | ||||||    
T  15596063 aagctgcc 15596056  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 2 - 159
Target Start/End: Original strand, 4677526 - 4677683
Alignment:
Q  2 gagaagcaccacagagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatg 101  Q
    ||||| ||| ||||||| ||||| ||  ||||||| ||||| |||| |||||||||||||||||||||||| ||| |||||||||||||||||||| |||    
T  4677526 gagaatcacaacagagtggagattatttacaatgaacaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatg 4677625  T
Q  102 ctgctaagaatcaggctgccgctaacccacaaaacaccatctttggtatgtttctatt 159  Q
    |||||||||||||  ||||| | ||| |  |||||||  |||||||||  ||||||||    
T  4677626 ctgctaagaatcaatctgccaccaactctgaaaacactgtctttggtaaatttctatt 4677683  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 34465246 - 34465346
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatc 113  Q
    ||||||||||| ||  ||||||||||||| |||| ||| |||||||||||||||||||| |||||||||||||| ||||| ||| |||||||||||||||    
T  34465246 agagtagagattattgacaatgaccaaggtaacacaaccacaccttcttttgttgcttttactcatgatcaaagattgatcggtaatgctgctaagaatc 34465345  T
Q  114 a 114  Q
    |    
T  34465346 a 34465346  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 187 - 281
Target Start/End: Complemental strand, 36772650 - 36772557
Alignment:
Q  187 caataatttttagggttaatcaagtaaatggtccctctgataatatccataatttcatttttattcc-tacaaataaaaatcgcattttttagttt 281  Q
    ||||| |||||||||||||| |||||||||||  |||| | ||||| || ||||| ||||||| ||| ||||||  |||||| || ||||||||||    
T  36772650 caatattttttagggttaattaagtaaatggt--ctctaaaaatattcagaattttatttttaatccttacaaaataaaatcacactttttagttt 36772557  T

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Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 149
Target Start/End: Original strand, 42554185 - 42554320
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatc 113  Q
    ||||| ||||| || |||||||| ||||| |||| |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||| |||    
T  42554185 agagttgagattattcacaatgatcaaggcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgctgctaaggatc 42554284  T
Q  114 aggctgccgctaacccacaaaacaccatctttggta 149  Q
    |  | ||| | ||||| ||||||||  |||||||||    
T  42554285 aaaccgccaccaacccccaaaacactgtctttggta 42554320  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 28221045 - 28220906
Alignment:
Q  20 gagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctg 119  Q
    ||||| || |||||||| ||||| |||| |||||| ||||||||||||||||||||  ||||| ||||||||||||| ||||||||||| |||||  | |    
T  28221045 gagattattcacaatgatcaaggcaacaaaacaactccttcttttgttgctttcaccgatgatgaaaggttgattggcgatgctgctaaaaatcaaacgg 28220946  T
Q  120 ccgctaacccacaaaacaccatctttggtatgtttctatt 159  Q
    ||   ||||| ||||| ||| |||||||||  ||||||||    
T  28220945 ccaacaacccccaaaataccgtctttggtaaatttctatt 28220906  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 42774687 - 42774608
Alignment:
Q  197 tagggttaatcaagtaaatggtccctctgataatatccataatttcatttttattcctacaaataaaaatcgcattttttagt 279  Q
    ||||||||||||||||||||||   ||||  ||||| || ||||||||||||| || ||||||  ||||| ||||| ||||||    
T  42774687 tagggttaatcaagtaaatggt---tctgtaaatattcaaaatttcatttttagtcatacaaaataaaattgcattgtttagt 42774608  T

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Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 43745925 - 43745793
Alignment:
Q  14 agagtagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatc 113  Q
    ||||| ||||| || |||||||| ||||| |||| ||||||   ||||||||||||||| ||| || || |||||||||| ||||| |||||||||||||    
T  43745925 agagttgagattattcacaatgatcaaggcaacaaaacaac---ttcttttgttgcttttactgatcatgaaaggttgataggtgacgctgctaagaatc 43745829  T
Q  114 aggctgccgctaacccacaaaacaccatctttggta 149  Q
    |  | ||| | ||||| |||||||||||||||||||    
T  43745828 aaaccgccaccaaccctcaaaacaccatctttggta 43745793  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 12529957 - 12529857
Alignment:
Q  29 cacaatgaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgccgctaacc 128  Q
    |||||||| |||||||||| |||||||||||||| ||||||||| ||| ||  ||| || ||||||||| ||||||| || ||||| ||| || ||||||    
T  12529957 cacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcagagattgattggtcatgctgccaaaaatcaagcttcctctaacc 12529858  T
Q  129 c 129  Q
    |    
T  12529857 c 12529857  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 28911363 - 28911273
Alignment:
Q  69 ctttcactcatgatcaaaggttgattggtgatgctgctaagaatcaggctgccgctaacccacaaaacaccatctttggtatgtttctatt 159  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||| | |||||  |||||||  | || ||||| ||||||||    
T  28911363 ctttcaccgatgatcaaaggttgattggtgatgctgctaagaatcaggctgccaccaaccccgaaaacactgttttaggtatatttctatt 28911273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 11159723 - 11159652
Alignment:
Q  35 gaccaaggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgattggtgatgctgct 106  Q
    |||||||| || |||||||||||||||| |||||| |||||| |   ||||||  |||||||||||||||||    
T  11159723 gaccaagggaatagaacaacaccttcttatgttgccttcactgactctcaaagaatgattggtgatgctgct 11159652  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 11198292 - 11198234
Alignment:
Q  18 tagagatcatacacaatgaccaaggaaacagaacaacaccttcttttgttgctttcact 76  Q
    ||||||||||||  || |||||||| || |||||||||||||||| |||||| ||||||    
T  11198292 tagagatcataccgaacgaccaagggaatagaacaacaccttcttatgttgccttcact 11198234  T

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Target: scaffold0211 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 15918 - 15840
Alignment:
Q  201 gttaatcaagtaaatggtccctctgataatatccataatttcatttttattcc-tacaaataaaaatcgcattttttagtt 280  Q
    |||||| ||||||||||||||| | |  ||||||| ||||||||||||| ||| |||||| | |||||||| |||||||||    
T  15918 gttaattaagtaaatggtccctataa--atatccagaatttcatttttagtccatacaaaaataaatcgcactttttagtt 15840  T

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Target: scaffold0284 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 201 - 280
Target Start/End: Complemental strand, 8487 - 8407
Alignment:
Q  201 gttaatcaagtaaatggtccctctgataatatccataatttcatttttattcc-tacaaataaaaatcgcattttttagtt 280  Q
    |||||| ||||||||||||| | |   |||||||| ||||||||||||| ||| |||||| | |||||||| |||||||||    
T  8487 gttaattaagtaaatggtccatatatgaatatccagaatttcatttttagtccatacaaaaataaatcgcactttttagtt 8407  T

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