View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_high_21 (Length: 238)
Name: NF1128_high_21
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3802800 - 3802593
Alignment:
| Q |
1 |
cgaataacttgaatgatgggcacatggattggtttttctacctcatcgcagcgttaagtgctcttaaccttgtcgtctacgttttctgtgctcggtggta |
100 |
Q |
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| T |
3802800 |
cgaataacttgaatgatgggcacatggattggtttttctacctcatcgcagcgttaagtgctcttaaccttgtcgtctacgtgttctgtgctcggtggta |
3802701 |
T |
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| Q |
101 |
caagggcgtcaataacgttgaaggtagtgtgaatctcagaagccaagatgacgatgaagtgattgctaaagtttgattgattcagagaagcttgattttt |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||| | |||| ||||||||| ||| |||||||||||||| || ||||||||||||||| |
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| T |
3802700 |
caagggtgtcaataacgttgaaggtagtgtgaatctcagttgtaaagagaacgatgaagcaattaataaagtttgattgaaacacagaagcttgattttt |
3802601 |
T |
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| Q |
201 |
atgtgtttt |
209 |
Q |
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|||||||| |
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| T |
3802600 |
-tgtgtttt |
3802593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 397984 - 398131
Alignment:
| Q |
1 |
cgaataacttgaatgatgggcacatggattggtttttctacctcatcgcagcgttaagtgctcttaaccttgtcgtctacgttttctgtgctcggtggta |
100 |
Q |
| |
|
|||||||||| |||| |||||||||||| |||||||||||||||| |||||| ||||||| ||| |||||||| |||| || ||||||||||||||||| |
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| T |
397984 |
cgaataacttaaatgttgggcacatggacaggtttttctacctcattgcagcgctaagtgcccttgaccttgtcatctatgtgttctgtgctcggtggta |
398083 |
T |
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| Q |
101 |
caagggcgtcaataacgttgaaggtagtgtgaatctcagaagccaaga |
148 |
Q |
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|||||| |||| ||| |||||||||||| ||| || |||||||||| |
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| T |
398084 |
caagggtgtcacgaacattgaaggtagtgacaatgtcggaagccaaga |
398131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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