View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1128_low_1 (Length: 708)

Name: NF1128_low_1
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1128_low_1
NF1128_low_1
[»] chr3 (1 HSPs)
chr3 (30-701)||(53539909-53540580)


Alignment Details
Target: chr3 (Bit Score: 660; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 30 - 701
Target Start/End: Complemental strand, 53540580 - 53539909
Alignment:
Q  30 ccatctacttcgtcttcatcttcaacatcatcttataaattggttaagaaaagcaaaagttagtttctgcagaacttcacattattttgattttttgtgt 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  53540580 ccatctacttcgtcttcatcttcaacatcatcttataaattggttaagaaaagcaaaagttagtttccgcagaacttcacattattttgattttttgtgt 53540481  T
Q  130 atagaattggaattaaataatgatttccacgcataccatattcattatcagatatatcctccccttcattgttctgataacactcagcctcgaaatcttc 229  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53540480 atagaattggaattaaataatgatttccactcataccatattcattatcagatatatcctccccttcattgttctgataacactcagcctcgaaatcttc 53540381  T
Q  230 atgatgaaggaaactcaatccatcatcaactgtttctgctatgttgccttctacatctgcatcataggaattgtgtaagaagttgttgttatatcaaata 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53540380 atgatgaaggaaactcaatccatcatcaactgtttctgctatgttgccttctacatctgcatcataggaattgtgtaagaagttgttgttatatcaaata 53540281  T
Q  330 ttaaaattcacctggcctgggaaaattagaaaattcatgaacgcagtggcaattctgatgtcaaattaccataattgttttcaggaatgtcggaaacctc 429  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53540280 ttaaaattcacctggcctgggaaaattagacaattcatgaacgcagtggcaattctgatgtcaaattaccataattgttttcaggaatgtcggaaacctc 53540181  T
Q  430 accgttctcattgcactccatcggtaagtacacaacttgtgtgaatcccaatttgtgtttatcgcgttgctcggcatctagtattagagaaatacaactc 529  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53540180 accgttctcattgcactccatcggtaagtacacaacttgtgtgaatcccaatttgtgtttatcgcgttgctcggcatctagtattagagaaatacaactc 53540081  T
Q  530 agatgaatcccaaaatactaattaatttattaagcaaaatgtaagcatatatgatacagaagtttgattataataagttcatatgacaatttaccatgca 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53540080 agatgaatcccaaaatactaattaatttattaagcaaaatgtaagcatatatgatacagaagtttgattataataagttcatatgacaatttaccatgca 53539981  T
Q  630 ctttggttggaacttcatcctcttcaaccattccacaactatctattgccattgcatgattatcctttgttt 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53539980 ctttggttggaacttcatcctcttcaaccattccacaactatctattgccattgcatgattatcctttgttt 53539909  T

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