View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1128_low_10 (Length: 442)

Name: NF1128_low_10
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1128_low_10
NF1128_low_10
[»] chr6 (7 HSPs)
chr6 (30-427)||(33217182-33217578)
chr6 (30-133)||(4006627-4006730)
chr6 (68-133)||(1402947-1403012)
chr6 (88-139)||(2117374-2117425)
chr6 (92-129)||(1904790-1904827)
chr6 (92-129)||(1909023-1909060)
chr6 (48-133)||(29274283-29274368)
[»] chr3 (6 HSPs)
chr3 (40-133)||(1395594-1395687)
chr3 (104-171)||(14548739-14548804)
chr3 (59-133)||(24235737-24235811)
chr3 (74-132)||(32555036-32555094)
chr3 (94-139)||(35246639-35246684)
chr3 (57-133)||(33307506-33307582)
[»] chr5 (5 HSPs)
chr5 (57-133)||(18704090-18704165)
chr5 (92-133)||(34205214-34205255)
chr5 (104-171)||(37588378-37588443)
chr5 (67-133)||(39823175-39823241)
chr5 (57-121)||(35135728-35135792)
[»] chr2 (7 HSPs)
chr2 (50-133)||(10143105-10143188)
chr2 (59-119)||(6547852-6547912)
chr2 (74-133)||(11513855-11513914)
chr2 (59-133)||(43199356-43199430)
chr2 (50-131)||(11344340-11344421)
chr2 (92-133)||(36863679-36863720)
chr2 (92-132)||(33944580-33944620)
[»] chr4 (7 HSPs)
chr4 (60-133)||(49219082-49219155)
chr4 (87-139)||(24091433-24091485)
chr4 (92-133)||(8130149-8130190)
chr4 (57-122)||(44119227-44119292)
chr4 (56-133)||(55870395-55870472)
chr4 (94-171)||(18628561-18628636)
chr4 (57-133)||(45128364-45128440)
[»] chr8 (1 HSPs)
chr8 (61-133)||(38561670-38561742)
[»] chr7 (7 HSPs)
chr7 (57-133)||(1417204-1417280)
chr7 (57-133)||(49060480-49060556)
chr7 (50-121)||(31002694-31002765)
chr7 (56-133)||(5006563-5006640)
chr7 (50-131)||(5373158-5373239)
chr7 (92-133)||(24909639-24909680)
chr7 (89-133)||(36537892-36537936)
[»] chr1 (6 HSPs)
chr1 (57-133)||(48830130-48830206)
chr1 (50-133)||(17269183-17269266)
chr1 (74-133)||(27738234-27738293)
chr1 (58-133)||(42556685-42556760)
chr1 (77-133)||(28467361-28467417)
chr1 (92-132)||(29007771-29007811)
[»] scaffold0024 (1 HSPs)
scaffold0024 (50-133)||(27509-27592)


Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 30 - 427
Target Start/End: Complemental strand, 33217578 - 33217182
Alignment:
Q  30 taattaaccacttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgtttt 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||    
T  33217578 taattaaccacttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaa-caaagttaaaatatttttatataagctataaattgtttt 33217480  T
Q  130 cataggttattatggttgagagcttatggaataagctgaaaagcaaattctagtacacaaacaagaggatcaataacactataggctaacataagatcaa 229  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217479 cgtaggttattatggttgagagcttatggaataagctgaaaagcaaattctagtacacaaacaagaggatcaataacactataggctaacataagatcaa 33217380  T
Q  230 aattaacaagat-nnnnnnnnnnnnntcatctaatcttgctctcaatcatctcattttcttcttgcttttcaacactttattagcacacacaaatattag 328  Q
    ||||||||||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217379 aattaacaagataaaaagtaaaaaaatcatctaatcttgctctcaatcatctcattttcttcttgcttttcaacactttattagcacacacaaatattag 33217280  T
Q  329 aaaaatctagggacagtaaatcaacaatgaaagtggtataatatttagacaagtaaaacatgatataatattaataacaaaaaactactaagagcgcat 427  Q
    |||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33217279 aaaaatctagggacagtaaatcaacaat-atagtggtaaaatatttagacaagtaaaacatgatataatattaataacaaaaaactactaagagcgcat 33217182  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 4006627 - 4006730
Alignment:
Q  30 taattaaccacttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgtttt 129  Q
    ||||||| | ||||||||| |||||| |||| ||||  ||||| || |||||| | | ||| ||||||||| | |||||||||||||||||| |||||||    
T  4006627 taattaatcccttatagcataagtgcttatgcataagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgtttt 4006726  T
Q  130 cata 133  Q
    ||||    
T  4006727 cata 4006730  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 1402947 - 1403012
Alignment:
Q  68 tatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||| || |||||||| | ||| ||||| ||| |||||| |||||||||||||||||||||||||    
T  1402947 tatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcata 1403012  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 2117374 - 2117425
Alignment:
Q  88 aaacaaagtcaaaatatttttatataagctataaattgttttcataggttat 139  Q
    ||||||||||||| |||||| |||||| |||||| ||||||||||| |||||    
T  2117374 aaacaaagtcaaactattttcatataatctataagttgttttcataagttat 2117425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 1904790 - 1904827
Alignment:
Q  92 aaagtcaaaatatttttatataagctataaattgtttt 129  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  1904790 aaagtcaaattatttttatataagctatagattgtttt 1904827  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 1909023 - 1909060
Alignment:
Q  92 aaagtcaaaatatttttatataagctataaattgtttt 129  Q
    ||||||||| ||||||||||||||||||| ||||||||    
T  1909023 aaagtcaaattatttttatataagctatagattgtttt 1909060  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 29274368 - 29274283
Alignment:
Q  48 agaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||| ||| |||||||||  ||||| || | |||||| | ||| ||||||||| | |||| |||||||||||||| ||||||||||    
T  29274368 agaaatgcttatgtataagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcata 29274283  T

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Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 1395594 - 1395687
Alignment:
Q  40 cttatagcagaagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||| ||||||||||||||||  ||||| || |||||||| | ||| ||||||||| |||||| ||||||||||| || ||||||||||    
T  1395594 cttatagcaaaagtgcatatgtataagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcata 1395687  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 14548804 - 14548739
Alignment:
Q  104 tttttatataagctataaattgttttcataggttattatggttgagagcttatgg-aataagctgaaaa 171  Q
    |||| ||||||||||||| ||||||||||| |||||| ||   |||||||||||| |||||||||||||    
T  14548804 ttttcatataagctataagttgttttcataagttattctg---gagagcttatggaaataagctgaaaa 14548739  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Complemental strand, 24235811 - 24235737
Alignment:
Q  59 tgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||| |||||| || |||||||| | | | ||||||||| |||||  ||||||||||||| |||||||||||    
T  24235811 tgtataagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcata 24235737  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 74 - 132
Target Start/End: Complemental strand, 32555094 - 32555036
Alignment:
Q  74 tacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcat 132  Q
    ||||||||||| | ||| ||||||||| ||||||  |||||||||||| ||||||||||    
T  32555094 tacaacaaaagataaaataaagtcaaattattttcctataagctataagttgttttcat 32555036  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 139
Target Start/End: Complemental strand, 35246684 - 35246639
Alignment:
Q  94 agtcaaaatatttttatataagctataaattgttttcataggttat 139  Q
    ||||||| |||||||||||||||||||| ||||||| ||| |||||    
T  35246684 agtcaaactatttttatataagctataagttgtttttataagttat 35246639  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 33307582 - 33307506
Alignment:
Q  57 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||| |||||| || | |||||| | |||||| | |||| |||||||||||||| |||||  ||||||||||    
T  33307582 tatgtataaattatttctagagcaaaagataaaacaatgccaaactatttttatataagttataagatgttttcata 33307506  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 18704165 - 18704090
Alignment:
Q  57 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||| |||||| || |||||||| | ||| ||||||||  |||||||||||||||||||| |||||||||||    
T  18704165 tatgtataagttatttctataacaaaagat-aaataaagtcaagctatttttatataagctataagttgttttcata 18704090  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 34205214 - 34205255
Alignment:
Q  92 aaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||| |||||||||||||||||||| |||||||||||    
T  34205214 aaagtcaaattatttttatataagctataagttgttttcata 34205255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 104 - 171
Target Start/End: Complemental strand, 37588443 - 37588378
Alignment:
Q  104 tttttatataagctataaattgttttcataggttattatggttgagagcttatgg-aataagctgaaaa 171  Q
    |||| ||||||||||||| ||||||||||| |||||| ||   |||||||||||| |||||||||||||    
T  37588443 ttttcatataagctataagttgttttcataagttattctg---gagagcttatggaaataagctgaaaa 37588378  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 39823241 - 39823175
Alignment:
Q  67 ttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||| |||||||| | ||| ||||||||| || ||| |||||||||| || |||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaactactttcatataagctacaagttgttttcata 39823175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 35135792 - 35135728
Alignment:
Q  57 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataa 121  Q
    |||||||||  ||||| || |||||||| | ||| ||||||||| |||||| |||||||||||||    
T  35135792 tatgtataagatatttctataacaaaagataaaataaagtcaaactattttcatataagctataa 35135728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 10143105 - 10143188
Alignment:
Q  50 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||| ||||||||| |||||| || |||||||| | |||  |||||||| | |||||||||||||||||| || ||||||||    
T  10143105 aagtgcttatgtataagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcata 10143188  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 6547852 - 6547912
Alignment:
Q  59 tgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctat 119  Q
    ||||||| |||||| || | ||||||   ||||||||||||||||||||||||||||||||    
T  6547852 tgtataagttatttctatagcaaaagtcaaaacaaagtcaaaatatttttatataagctat 6547912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Original strand, 11513855 - 11513914
Alignment:
Q  74 tacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||||| | ||| ||||||||| | |||| ||||||||||||| |||||||||||    
T  11513855 tacaacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcata 11513914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 43199356 - 43199430
Alignment:
Q  59 tgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||| |||||| ||||||||||| | ||| ||||| ||| ||| ||  |||||||||||| |||||||||||    
T  43199356 tgtataagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcata 43199430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 11344421 - 11344340
Alignment:
Q  50 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttca 131  Q
    |||||| |||| ||||  ||||| || |||||||| | ||| ||||||||| | |||| ||| |||||||||||||||||||    
T  11344421 aagtgcttatgcataagatatttctataacaaaagataaaagaaagtcaaattgttttcatacaagctataaattgttttca 11344340  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Complemental strand, 36863720 - 36863679
Alignment:
Q  92 aaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  36863720 aaagtcaaacaatttttatataagttataaattgttttcata 36863679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 33944580 - 33944620
Alignment:
Q  92 aaagtcaaaatatttttatataagctataaattgttttcat 132  Q
    ||||||||| | |||| ||||||||||||||||||||||||    
T  33944580 aaagtcaaattgttttcatataagctataaattgttttcat 33944620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 133
Target Start/End: Original strand, 49219082 - 49219155
Alignment:
Q  60 gtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||| |||||| || |||||||  | ||| ||||||||| |||||| ||||||||||||| |||||||||||    
T  49219082 gtataagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcata 49219155  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 24091433 - 24091485
Alignment:
Q  87 taaacaaagtcaaaatatttttatataagctataaattgttttcataggttat 139  Q
    |||| ||||||||| |||||| |||||||||||||| |||||||||| |||||    
T  24091433 taaataaagtcaaattattttcatataagctataaactgttttcataagttat 24091485  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 8130149 - 8130190
Alignment:
Q  92 aaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||| |||||| |||||||||||||| ||||||||||    
T  8130149 aaagtcaaattattttcatataagctataaactgttttcata 8130190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 44119292 - 44119227
Alignment:
Q  57 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaa 122  Q
    ||||||||| |||||| || | |||||| | |||||||||||| || |||| ||||||||||||||    
T  44119292 tatgtataagttatttctatagcaaaagataaaacaaagtcaatatgttttcatataagctataaa 44119227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 55870472 - 55870395
Alignment:
Q  56 atatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||||||||  |||| || |||||||| | ||| ||||||||| | |||| | ||||||||||| |||||||||||    
T  55870472 atatgtataatccatttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcata 55870395  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 171
Target Start/End: Complemental strand, 18628636 - 18628561
Alignment:
Q  94 agtcaaaatatttttatataagctataaattgttttcataggttattatggttgagagcttatgg-aataagctgaaaa 171  Q
    ||||||| | |||||||||||| |||||| |||||||||| |||||  ||   |||||||||||| |||||||||||||    
T  18628636 agtcaaactgtttttatataagttataaactgttttcataagttatcttg---gagagcttatggaaataagctgaaaa 18628561  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 45128440 - 45128364
Alignment:
Q  57 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||||||  ||||| || |||||||| | |||  || ||||| |||| | |||||||||||||||||||||||||    
T  45128440 tatgtataaactatttctataacaaaagataaaatcaaatcaaattattctcatataagctataaattgttttcata 45128364  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 61 - 133
Target Start/End: Original strand, 38561670 - 38561742
Alignment:
Q  61 tataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||| ||||||||| |||||||| | ||| ||||||||| ||||||||| ||  |||||| |||||||||||    
T  38561670 tataagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcata 38561742  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 1417204 - 1417280
Alignment:
Q  57 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||||||  |||||||| |||||||| | ||| ||||||||| | |||| |||||||| |||| |||||||||||    
T  1417204 tatgtataaactatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcata 1417280  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 49060480 - 49060556
Alignment:
Q  57 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||||||  ||||| || |||||||  | ||| ||||||||| |||||||||||||||||||| || ||||||||    
T  49060480 tatgtataagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 121
Target Start/End: Original strand, 31002694 - 31002765
Alignment:
Q  50 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataa 121  Q
    |||||| |||||||||  |||||  || ||||||| | ||| |||||||||||||||| |||||||||||||    
T  31002694 aagtgcttatgtataaactatttcaaccacaaaagataaaataaagtcaaaatattttcatataagctataa 31002765  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 56 - 133
Target Start/End: Complemental strand, 5006640 - 5006563
Alignment:
Q  56 atatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||||  ||||  || |||||||| | ||| ||||||||| | |||| ||||||| |||||||||||||||||    
T  5006640 atatgtataagctattcctataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcata 5006563  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 5373158 - 5373239
Alignment:
Q  50 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttca 131  Q
    |||||| ||||||||   ||||| || |||||||| | ||| |||||| ||| ||||||||||||| ||||| |||||||||    
T  5373158 aagtgcttatgtatatgctatttctataacaaaagataaaataaagtccaaacatttttatataagttataagttgttttca 5373239  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 133
Target Start/End: Original strand, 24909639 - 24909680
Alignment:
Q  92 aaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||| |||||| ||||||||||||| |||||||||||    
T  24909639 aaagtcaaattattttcatataagctataagttgttttcata 24909680  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 36537892 - 36537936
Alignment:
Q  89 aacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||||||||| |||||| ||||||||||| || ||||||||||    
T  36537892 aacaaagtcaaattattttcatataagctatgaagtgttttcata 36537936  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 48830206 - 48830130
Alignment:
Q  57 tatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||| |||||| ||  || |||| | ||| ||||||||| |||||| |||||||||||||| ||||||||||    
T  48830206 tatgtataagttatttctattaccaaagataaaataaagtcaaactattttcatataagctataaactgttttcata 48830130  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 17269183 - 17269266
Alignment:
Q  50 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||| ||||||||| |||||| || ||||||||   ||| ||||||||| | |||| |||||||| |||| |||||||||||    
T  17269183 aagtgcttatgtataagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcata 17269266  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 133
Target Start/End: Complemental strand, 27738293 - 27738234
Alignment:
Q  74 tacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    ||||||||||| | ||| ||||||||| | |||| ||||||||||||| |||||||||||    
T  27738293 tacaacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcata 27738234  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 42556760 - 42556685
Alignment:
Q  58 atgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||||| |||||| ||  ||||||| | ||| ||| ||||| || ||||||||||||||||| |||||||||||    
T  42556760 atgtataagttatttctatgacaaaagatgaaataaaatcaaactacttttatataagctataagttgttttcata 42556685  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 28467417 - 28467361
Alignment:
Q  77 aacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||||| | ||| ||||||||| |||||| |||||||||| || |||||||||||    
T  28467417 aacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcata 28467361  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 92 - 132
Target Start/End: Complemental strand, 29007811 - 29007771
Alignment:
Q  92 aaagtcaaaatatttttatataagctataaattgttttcat 132  Q
    ||||||||| |||||| ||||||||||||| ||||||||||    
T  29007811 aaagtcaaactattttcatataagctataagttgttttcat 29007771  T

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Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 27509 - 27592
Alignment:
Q  50 aagtgcatatgtataatttatttatacaacaaaagcttaaacaaagtcaaaatatttttatataagctataaattgttttcata 133  Q
    |||||| ||||||||| |||||| || |||| ||| | ||| ||||||||| | |||| |||||| |||||| |||||||||||    
T  27509 aagtgcttatgtataagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcata 27592  T

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