View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1128_low_13 (Length: 403)

Name: NF1128_low_13
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1128_low_13
NF1128_low_13
[»] chr4 (14 HSPs)
chr4 (185-397)||(33010882-33011094)
chr4 (49-178)||(11334323-11334452)
chr4 (16-75)||(11334451-11334510)
chr4 (69-123)||(198209-198263)
chr4 (133-188)||(48091135-48091190)
chr4 (86-179)||(33758080-33758173)
chr4 (133-181)||(199266-199314)
chr4 (133-179)||(388753-388799)
chr4 (133-179)||(3220517-3220563)
chr4 (133-179)||(35428240-35428286)
chr4 (137-179)||(39862887-39862929)
chr4 (133-171)||(52869455-52869493)
chr4 (137-182)||(33569717-33569762)
chr4 (86-123)||(37275144-37275181)
[»] chr2 (9 HSPs)
chr2 (19-179)||(43743728-43743888)
chr2 (133-171)||(39477365-39477403)
chr2 (133-182)||(9224263-9224312)
chr2 (133-182)||(18950535-18950584)
chr2 (133-179)||(4387000-4387046)
chr2 (133-179)||(12206788-12206834)
chr2 (133-179)||(16571118-16571164)
chr2 (133-166)||(14565214-14565247)
chr2 (137-186)||(20244215-20244264)
[»] chr6 (3 HSPs)
chr6 (16-179)||(32079019-32079181)
chr6 (133-179)||(33668221-33668267)
chr6 (133-181)||(13936680-13936728)
[»] chr8 (11 HSPs)
chr8 (133-180)||(35237258-35237305)
chr8 (133-179)||(11999120-11999166)
chr8 (133-182)||(4375032-4375081)
chr8 (133-180)||(16889194-16889241)
chr8 (133-179)||(7818474-7818520)
chr8 (133-171)||(11998464-11998502)
chr8 (133-179)||(33114228-33114274)
chr8 (133-179)||(39852154-39852200)
chr8 (133-179)||(43433811-43433857)
chr8 (133-179)||(43591656-43591702)
chr8 (135-179)||(41761799-41761843)
[»] chr5 (5 HSPs)
chr5 (133-180)||(39149471-39149518)
chr5 (133-181)||(3957498-3957546)
chr5 (69-123)||(14615945-14615999)
chr5 (133-179)||(28076009-28076055)
chr5 (86-123)||(2458309-2458346)
[»] chr7 (9 HSPs)
chr7 (133-179)||(36682835-36682881)
chr7 (134-179)||(23283883-23283928)
chr7 (133-186)||(27855559-27855612)
chr7 (137-179)||(85093-85135)
chr7 (133-166)||(4270189-4270222)
chr7 (133-174)||(4895122-4895163)
chr7 (133-174)||(19816932-19816973)
chr7 (139-179)||(19767878-19767918)
chr7 (133-181)||(30422783-30422830)
[»] scaffold0039 (1 HSPs)
scaffold0039 (133-181)||(90613-90661)
[»] chr3 (6 HSPs)
chr3 (133-180)||(3944894-3944941)
chr3 (133-171)||(38279417-38279455)
chr3 (133-179)||(50687748-50687794)
chr3 (137-179)||(53269392-53269434)
chr3 (86-123)||(21811935-21811972)
chr3 (86-123)||(37105032-37105069)
[»] chr1 (1 HSPs)
chr1 (133-173)||(43352828-43352868)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 185 - 397
Target Start/End: Original strand, 33010882 - 33011094
Alignment:
Q  185 atagtacacatatcatgtcagtagtcagtcaagtcagttgagaaagcgagaattgtgccgtgagaccgaaaacctttgaggtattctcaacatggcggaa 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33010882 atagtacacatatcatgtcagtagtcagtcaagtcagttgagaaagcgagaattgtgccgtgagaccgaaaacctttgaggtattctcaacatggcggaa 33010981  T
Q  285 aataacaaacctgaagaagaacccttcttcctcacccttcttcctcacaccgattccgcaatcaacaacgactcagccatgtctcaactcagagactcac 384  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33010982 aataacaaacctgaagaagaacccttcttcctcacccttgttcctcacaccgattccgcaatcaacaacgactcagccatgtctcaactcagagactcac 33011081  T
Q  385 tcctctctcaact 397  Q
    |||||||||||||    
T  33011082 tcctctctcaact 33011094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 49 - 178
Target Start/End: Complemental strand, 11334452 - 11334323
Alignment:
Q  49 agaggttgatgaagaaagactatacagtgtagacaacctatagtaagatcagtgttcccttttaatctgatggttnnnnnnnngtttcccatggtgggaa 148  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||        ||||||||| |||||||    
T  11334452 agaggttgatgaagaaagaatatacagtgtagacaacctatagtaagattagtgttcccttttaatctaatggttaaaaaaaagtttcccatagtgggaa 11334353  T
Q  149 atgattcacctttcccatatgaaatgtcac 178  Q
    | ||||||||||||| ||||||||||||||    
T  11334352 aggattcacctttcctatatgaaatgtcac 11334323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 11334510 - 11334451
Alignment:
Q  16 atgaaagtgaaagctaagccgtgaatgacactaagaggttgatgaagaaagactatacag 75  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  11334510 atgaaagtgaaagctaagccgtgaatgacactcagaggttgatgaagaaagaatatacag 11334451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 198263 - 198209
Alignment:
Q  69 tatacagtgtagacaacctatagtaagatcagtgttcccttttaatctgatggtt 123  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||| ||||||    
T  198263 tatacagtgtagacaacctataataagatcagtattcccttttaatctaatggtt 198209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 188
Target Start/End: Original strand, 48091135 - 48091190
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccataaaatag 188  Q
    ||||||||||||||||| |||| ||||||||||||||||||| ||||  |||||||    
T  48091135 tttcccatggtgggaaaagattaacctttcccatatgaaatgccacctaaaaatag 48091190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 179
Target Start/End: Original strand, 33758080 - 33758173
Alignment:
Q  86 ctatagtaagatcagtgttcccttttaatctgatggttnnnnnnnngtttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||| ||| ||||||||||||||||||||||||||||          || ||||||||||||| |||| ||||||||||| ||||||| ||||    
T  33758080 ctataataatatcagtgttcccttttaatctgatggttaaaaaaaacatttccatggtgggaaaggattgacctttcccatgtgaaatgacacc 33758173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 199266 - 199314
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 181  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  199266 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 199314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 388799 - 388753
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  388799 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 388753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 3220563 - 3220517
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||| ||| ||||||| |||||||||||||||||| ||||||||||    
T  3220563 tttcctatgatgggaaaggattcacctttcccatataaaatgtcacc 3220517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 35428240 - 35428286
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  35428240 tttcccatggtgggaaaggattaacctttcccatctgaaatgccacc 35428286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 39862887 - 39862929
Alignment:
Q  137 ccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  39862887 ccatggtgggaaaagattcctctttcccatatgaaatgtcacc 39862929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 52869493 - 52869455
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaa 171  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  52869493 tttcccatggtgggaaaggattcacctttcccatgtgaa 52869455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Complemental strand, 33569762 - 33569717
Alignment:
Q  137 ccatggtgggaaatgattcacctttcccatatgaaatgtcaccata 182  Q
    ||||||||||||| |||| ||||||||||| ||||||| |||||||    
T  33569762 ccatggtgggaaaggattgacctttcccatgtgaaatgccaccata 33569717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 37275181 - 37275144
Alignment:
Q  86 ctatagtaagatcagtgttcccttttaatctgatggtt 123  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  37275181 ctatagtaagatcaatgttcccttttaatctaatggtt 37275144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 43743728 - 43743888
Alignment:
Q  19 aaagtgaaagctaagccgtgaatgacactaagaggttgatgaagaaagactatacagtgtagacaacctatagtaagatcagtgttcccttttaatctga 118  Q
    |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  43743728 aaagtgaaagttaagccgtgaatgacactaagagcttgatgaagaaagaatatacattgtagacaacctatagtaagatcaatgttccctttaaatctga 43743827  T
Q  119 tggttnnnnnnnngtttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    |||||        |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  43743828 tggttaaaaaaaagtttcccatggtgggaaaggattcacctttcccatgtgaaatgtcacc 43743888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 171
Target Start/End: Original strand, 39477365 - 39477403
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaa 171  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  39477365 tttcccatggtgggaaatgattaacctttcccatatgaa 39477403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 182
Target Start/End: Complemental strand, 9224312 - 9224263
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccata 182  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| |||||||    
T  9224312 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccata 9224263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 18950535 - 18950584
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccata 182  Q
    ||||||||||||||||| |||| |||||| |||||||||||| |||||||    
T  18950535 tttcccatggtgggaaaggattaaccttttccatatgaaatgccaccata 18950584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 4387000 - 4387046
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  4387000 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 4387046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 12206834 - 12206788
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    |||| |||||||||||| |||| ||||||||||| ||||||||||||    
T  12206834 tttctcatggtgggaaaggattaacctttcccatgtgaaatgtcacc 12206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 16571164 - 16571118
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  16571164 tttcccatggtgggaaaggattaacctttcccatgtgaaatggcacc 16571118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 166
Target Start/End: Original strand, 14565214 - 14565247
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccat 166  Q
    ||||||||||||||||| ||||||||||||||||    
T  14565214 tttcccatggtgggaaaggattcacctttcccat 14565247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Original strand, 20244215 - 20244264
Alignment:
Q  137 ccatggtgggaaatgattcacctttcccatatgaaatgtcaccataaaat 186  Q
    ||||||||||||| |||| ||||||||||| ||||||| |||||| ||||    
T  20244215 ccatggtgggaaaggattaacctttcccatgtgaaatgccaccatcaaat 20244264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 32079181 - 32079019
Alignment:
Q  16 atgaaagtgaaagctaagccgtgaatgacactaagaggttgatgaagaaagactatacagtgtagacaacctatagtaagatcagtgttcccttttaatc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||||||    
T  32079181 atgaaagtgaaagctaagccgtgaatgacactaagaggttgatgaagaaagaatatacaatgt--acaacctatagtaagatcagtgttcccttttaatc 32079084  T
Q  116 tgatggtt-nnnnnnnngtttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||         ||||  |||||||| ||| |||||||||||||||| ||||||| ||||    
T  32079083 tgatggttaaaaaaaaagtttttcatggtggaaaaggattcacctttcccatgtgaaatgccacc 32079019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 33668267 - 33668221
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  33668267 tttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 33668221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 13936680 - 13936728
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 181  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  13936680 tttcccatggtgggaaaggattaacctttcccatgtgaaatggcaccat 13936728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 35237305 - 35237258
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacca 180  Q
    ||||||||||||||||| |||| ||||||||||| |||||||||||||    
T  35237305 tttcccatggtgggaaaggattaacctttcccatgtgaaatgtcacca 35237258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 11999120 - 11999166
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  11999120 tttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 11999166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 4375032 - 4375081
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccata 182  Q
    |||| |||||||| |||||||||| ||||||||||||||||| |||||||    
T  4375032 tttctcatggtggaaaatgattcatctttcccatatgaaatgccaccata 4375081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 16889241 - 16889194
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacca 180  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| |||||    
T  16889241 tttcccatggtgggaaaagattaacctttcccatgtgaaatgccacca 16889194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 7818520 - 7818474
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  7818520 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 7818474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 11998502 - 11998464
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaa 171  Q
    |||||||||||||||||||||| ||||||||||| ||||    
T  11998502 tttcccatggtgggaaatgattaacctttcccatgtgaa 11998464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 33114228 - 33114274
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  33114228 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 33114274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 39852200 - 39852154
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  39852200 tttcccatggtgggaaaggattaacctttcccatttgaaatgccacc 39852154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 43433857 - 43433811
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||||||||||||| |||||||||| | ||||| ||||    
T  43433857 tttcccatggtgggaaatgattcccctttcccatgttaaatgccacc 43433811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 43591656 - 43591702
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    |||||||||||||||||| ||| ||||||||||| ||||||| ||||    
T  43591656 tttcccatggtgggaaataattaacctttcccatgtgaaatgacacc 43591702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 41761843 - 41761799
Alignment:
Q  135 tcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||||| |||| ||||||||||| ||||||| ||||    
T  41761843 tcccatggtgggaaaggattaacctttcccatgtgaaatgccacc 41761799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 133 - 180
Target Start/End: Original strand, 39149471 - 39149518
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacca 180  Q
    ||||||||||||||||| |||||||||||||||| ||||||| |||||    
T  39149471 tttcccatggtgggaaaggattcacctttcccatgtgaaatgccacca 39149518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 3957546 - 3957498
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 181  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  3957546 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccat 3957498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 14615999 - 14615945
Alignment:
Q  69 tatacagtgtagacaacctatagtaagatcagtgttcccttttaatctgatggtt 123  Q
    ||||| |||| ||||||||||||||||||||||||||  |||| |||| ||||||    
T  14615999 tatacggtgtggacaacctatagtaagatcagtgttctattttgatcttatggtt 14615945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 28076009 - 28076055
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||| |||||||| |||||| |||| ||||||||||||    
T  28076009 tttcccatggtggaaaatgattaaccttttccatgtgaaatgtcacc 28076055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 2458309 - 2458346
Alignment:
Q  86 ctatagtaagatcagtgttcccttttaatctgatggtt 123  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  2458309 ctatagtaagatcaatgttcccttttaatctaatggtt 2458346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 179
Target Start/End: Complemental strand, 36682881 - 36682835
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  36682881 tttcccatggtgggaaatgattaacctttcccatgtgaaatgccacc 36682835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 134 - 179
Target Start/End: Original strand, 23283883 - 23283928
Alignment:
Q  134 ttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    |||||||||||||||| ||||| |||||||||| ||||||||||||    
T  23283883 ttcccatggtgggaaaggattcccctttcccatgtgaaatgtcacc 23283928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 27855612 - 27855559
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccataaaat 186  Q
    |||| ||||||||||||||||| ||||||||||| ||||||| |||| ||||||    
T  27855612 tttctcatggtgggaaatgattaacctttcccatgtgaaatgccaccttaaaat 27855559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 85093 - 85135
Alignment:
Q  137 ccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||| |||||||||||||||| ||||||| ||||    
T  85093 ccatggtgggaaaggattcacctttcccatgtgaaatgccacc 85135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 4270222 - 4270189
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccat 166  Q
    ||||||||||||||||| ||||||||||||||||    
T  4270222 tttcccatggtgggaaaggattcacctttcccat 4270189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 4895122 - 4895163
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatg 174  Q
    ||||||||||||| |||||||| ||||||||||| |||||||    
T  4895122 tttcccatggtggaaaatgattaacctttcccatgtgaaatg 4895163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 19816932 - 19816973
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatg 174  Q
    ||||||||||||| ||| |||| |||||||||||||||||||    
T  19816932 tttcccatggtggaaaaggattaacctttcccatatgaaatg 19816973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 19767918 - 19767878
Alignment:
Q  139 atggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||| |||| | ||||||||||||||||||||||    
T  19767918 atggtgggaaaggattaaactttcccatatgaaatgtcacc 19767878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 30422783 - 30422830
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 181  Q
    |||| |||||||||||| |||||||||||||||| ||||||| ||||||    
T  30422783 tttctcatggtgggaaa-gattcacctttcccatgtgaaatgccaccat 30422830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 90661 - 90613
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcaccat 181  Q
    ||||| ||||||| |||||||||||||||||||| ||||||| ||||||    
T  90661 tttcctatggtggaaaatgattcacctttcccatgtgaaatgccaccat 90613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 133 - 180
Target Start/End: Complemental strand, 3944941 - 3944894
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacca 180  Q
    ||||||||||||||||| |||| ||||||||||| ||||||| |||||    
T  3944941 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccacca 3944894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 171
Target Start/End: Complemental strand, 38279455 - 38279417
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaa 171  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  38279455 tttcccatggtgggaaaggattcacctttcccatgtgaa 38279417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 50687748 - 50687794
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    |||||||||||||||||  ||| ||||||||||| ||||||||||||    
T  50687748 tttcccatggtgggaaagaattaacctttcccatgtgaaatgtcacc 50687794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 53269392 - 53269434
Alignment:
Q  137 ccatggtgggaaatgattcacctttcccatatgaaatgtcacc 179  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||    
T  53269392 ccatggtgggaaaggattaacctttcccatgtgaaatgtcacc 53269434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Complemental strand, 21811972 - 21811935
Alignment:
Q  86 ctatagtaagatcagtgttcccttttaatctgatggtt 123  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  21811972 ctatagtaagatcaatgttcccttttaatctaatggtt 21811935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 37105032 - 37105069
Alignment:
Q  86 ctatagtaagatcagtgttcccttttaatctgatggtt 123  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  37105032 ctatagtaagatcaatgttcccttttaatctaatggtt 37105069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 43352828 - 43352868
Alignment:
Q  133 tttcccatggtgggaaatgattcacctttcccatatgaaat 173  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  43352828 tttcctatggtggaaaaggattcacctttcccatatgaaat 43352868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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