View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_19 (Length: 361)
Name: NF1128_low_19
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 30 - 342
Target Start/End: Complemental strand, 2948611 - 2948299
Alignment:
| Q |
30 |
atacattcacagagatatttgggcaacaaaatgtaggttccttacatggttttatgtataagtaccttaagaacatgatgctcaatttgtttggtcctga |
129 |
Q |
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| T |
2948611 |
atacattcacagagatatttgggcaacaaaatgtaggttccttacatggttttatgtataagtaccttaagaacatgatgctcaatttgtttggtcctga |
2948512 |
T |
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| Q |
130 |
aagtcttaaaaagatgatctcagaggttgaacaagcagcctgcagaacattacaacaggcgtcgtgtcaggacagcgtcgagctgaaggaagcaacagaa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2948511 |
aagtcttaaaaagatgatctcagaggttgaacaagcagcctgcagaacattacaacaggcgtcgtgtcaggacagtgtcgagctgaaggaagcaacagaa |
2948412 |
T |
|
| Q |
230 |
acggtaaaattatcaaactttaaactattctttcattcctctgcaattttaaccttcttccattccttgtctaaagtctaaacctttctttcctatatat |
329 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2948411 |
acggtaaaattatcaaactttacactattctttcattcctctgcaattttaaccttcttccattccttgtctaaagtctaaacctttctttcctatatat |
2948312 |
T |
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| Q |
330 |
tatcattcagatg |
342 |
Q |
| |
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||||||||||||| |
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| T |
2948311 |
tatcattcagatg |
2948299 |
T |
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