View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1128_low_20 (Length: 353)

Name: NF1128_low_20
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1128_low_20
NF1128_low_20
[»] chr6 (3 HSPs)
chr6 (16-208)||(11298217-11298409)
chr6 (204-258)||(11298883-11298937)
chr6 (24-86)||(11292878-11292940)
[»] chr7 (1 HSPs)
chr7 (24-70)||(30903989-30904035)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 5e-84; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 16 - 208
Target Start/End: Original strand, 11298217 - 11298409
Alignment:
Q  16 acctgtggtaatacatcatggtctcttttctgtaagttttgttgatgctgatacaaattaatataaattatacactcgtctcacaattgacttgatgaat 115  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11298217 acctgtgctaatacatcatggtctcttttctgtaagttttgttgatgctgatacaaattaatataaattatacactcgtctcacaattgacttgatgaat 11298316  T
Q  116 aaatgaaagagaacgattattttacatatttactctttttattcattactatactgtannnnnnnnnctttctaaataattaactgtgttttt 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         || |||||||||||||||||||||||    
T  11298317 aaatgaaagagaacgattattttacatatttactctttttattcattactatactgtatttttttttctatctaaataattaactgtgttttt 11298409  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 204 - 258
Target Start/End: Original strand, 11298883 - 11298937
Alignment:
Q  204 tttttattataataaaaacaaaaacaaagttggatataataatttgagaacgatg 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11298883 tttttattataataaaaacaaaaacaaagttggatataataatttgagaacgatg 11298937  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 11292878 - 11292940
Alignment:
Q  24 taatacatcatggtctcttttctgtaagttttgttgatgctgatacaaattaatataaattat 86  Q
    ||||||||||||||||||||| |||||||||||||| |   ||||||||||||||||||||||    
T  11292878 taatacatcatggtctcttttgtgtaagttttgttgcttaagatacaaattaatataaattat 11292940  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 30903989 - 30904035
Alignment:
Q  24 taatacatcatggtctcttttctgtaagttttgttgatgctgataca 70  Q
    ||||||| ||||||||||||| |||||||||||||| ||| ||||||    
T  30903989 taatacaacatggtctcttttgtgtaagttttgttgttgcagataca 30904035  T

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