View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_21 (Length: 352)
Name: NF1128_low_21
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 11298217 - 11298374
Alignment:
| Q |
16 |
acctgtggtaatacatcatggtctcttttctgtaagttttgttgatgctgatacaaattaatataaattatacactcgtctcacaattgacttgatgaat |
115 |
Q |
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| T |
11298217 |
acctgtgctaatacatcatggtctcttttctgtaagttttgttgatgctgatacaaattaatataaattatacactcgtctcacaattgacttgatgaat |
11298316 |
T |
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| Q |
116 |
aaatgaaagagaacgattattttacatatttactctttttattcattactatactgta |
173 |
Q |
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| T |
11298317 |
aaatgaaagagaacgattattttacatatttactctttttattcattactatactgta |
11298374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 11298883 - 11298937
Alignment:
| Q |
203 |
tttttattataataaaaacaaaaacaaagttggatataataatttgagaacgatg |
257 |
Q |
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| T |
11298883 |
tttttattataataaaaacaaaaacaaagttggatataataatttgagaacgatg |
11298937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 11292878 - 11292940
Alignment:
| Q |
24 |
taatacatcatggtctcttttctgtaagttttgttgatgctgatacaaattaatataaattat |
86 |
Q |
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| T |
11292878 |
taatacatcatggtctcttttgtgtaagttttgttgcttaagatacaaattaatataaattat |
11292940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 30903989 - 30904035
Alignment:
| Q |
24 |
taatacatcatggtctcttttctgtaagttttgttgatgctgataca |
70 |
Q |
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| T |
30903989 |
taatacaacatggtctcttttgtgtaagttttgttgttgcagataca |
30904035 |
T |
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