View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_23 (Length: 323)
Name: NF1128_low_23
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 19172242 - 19172001
Alignment:
| Q |
1 |
cacgtatggaacaaatagagtgcggtttgaagtccatcgttccaacacttaacgataggcttacacgcgcggaaggctgtttcgttgaacacgttgttgg |
100 |
Q |
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| T |
19172242 |
cacgtatggagcaaatagagtgcggtttgaagtccatcgttccaacgcttaacgataggcttacacgcgcggaaggctgtttcattaaaaacgttgttgg |
19172143 |
T |
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| Q |
101 |
tgactggttttcgtgtaaagatcgcggtgataataaagggaaagctgttttgggaaatgatgttagggtttacatagaagagtttgttagtgttgttctt |
200 |
Q |
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| T |
19172142 |
tgactggttttcgtgtaaagatcgcggtgataataaagggaaagttgttttgggaaatgatgttagggtttacatagaagagtttgttagtgttgttctt |
19172043 |
T |
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| Q |
201 |
tatgcaaataggttaaggagaagtgttcttgttgatattatt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
19172042 |
tatgcaaataggttaaggagaagtgttcttgttgatattatt |
19172001 |
T |
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