View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_24 (Length: 323)
Name: NF1128_low_24
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 40834846 - 40835068
Alignment:
| Q |
1 |
catacttggtcatcccatgctttctcattgttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40834846 |
catacttggtcatcccatgctttctcattgttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaa |
40834945 |
T |
|
| Q |
101 |
ggtgaaccataaacactgcaaacccaattggaagtggtgccaaaacctatacacaacaaaaccaaacaataaaaatatacaacattaattaaactttaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
40834946 |
ggtgaaccataaacactgcaaacccaattggaagtggtgccaaaacctatacacaacaaaaccaaacaataaaaatacacaac----attaaactttaaa |
40835041 |
T |
|
| Q |
201 |
gtactattttcttttcttagtctaaaa |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
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|
| T |
40835042 |
gtactattttcttttcttagtctaaaa |
40835068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 58 - 145
Target Start/End: Original strand, 2649226 - 2649313
Alignment:
| Q |
58 |
ctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaa |
145 |
Q |
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| T |
2649226 |
ctagctgggttaatgccagttccagtaatgggaattgtagccaagtgaaccaaaaacacagcaaacccaattggaagaggtgccaaaa |
2649313 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 60 - 145
Target Start/End: Original strand, 35229894 - 35229979
Alignment:
| Q |
60 |
agcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaa |
145 |
Q |
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| T |
35229894 |
agcagggttaataccagttccagtaattgggatagtggccaagtgaaccaagaacacagcgaacccaattggcaatggtgccaaaa |
35229979 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 145
Target Start/End: Original strand, 4481833 - 4481971
Alignment:
| Q |
7 |
tggtcatcccatgctttctcattgttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaa |
106 |
Q |
| |
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||||||||||| |||| || |||||||| || | |||||| || | |||||||| |||||||||||||| || || || ||||| ||||| | || | |
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| T |
4481833 |
tggtcatcccaagcttggtccttgttgtatataagagcagcacctagacttctagctgggttaataccagtccctgtaattggaattgtagccaaatgca |
4481932 |
T |
|
| Q |
107 |
ccataaacactgcaaacccaattggaagtggtgccaaaa |
145 |
Q |
| |
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||| |||||| ||||| |||||||| ||||||||||||| |
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|
| T |
4481933 |
ccaaaaacacagcaaatccaattggcagtggtgccaaaa |
4481971 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 148
Target Start/End: Complemental strand, 21794119 - 21794001
Alignment:
| Q |
30 |
gttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaatt |
129 |
Q |
| |
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|||||| ||||| || | ||| || ||||| || ||||||||||| || || || | || |||||||| | ||||||||| || || ||||| ||||| |
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|
| T |
21794119 |
gttgtagatcacggctgatccgaaacttcttgccgggttaataccggtgccggtaacggggatagtagccaagtgaaccatgaaaacagcaaatccaatg |
21794020 |
T |
|
| Q |
130 |
ggaagtggtgccaaaacct |
148 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
21794019 |
ggaagtggtgccaaaacct |
21794001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 55221190 - 55221063
Alignment:
| Q |
1 |
catacttggtcatcccatgctttctcattgttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaa |
100 |
Q |
| |
|
||||| ||||||||||| |||| |||||||| | || |||||||| || ||||| || |||||||| || || || || ||||| || ||||| |||| |
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| T |
55221190 |
catacatggtcatcccaaactttggcattgttgaagatgacagcagcaccgaagctccttgcagggttgattccggtaccggtgattggtatagttgcaa |
55221091 |
T |
|
| Q |
101 |
ggtgaaccataaacactgcaaacccaat |
128 |
Q |
| |
|
||||||||||||| || ||||| ||||| |
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|
| T |
55221090 |
ggtgaaccataaaaacagcaaaaccaat |
55221063 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 40206919 - 40206978
Alignment:
| Q |
91 |
atagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgccaaaacctat |
150 |
Q |
| |
|
|||||||| | ||||||||| ||||| ||||| ||||| |||||||||||||| |||||| |
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|
| T |
40206919 |
atagtagccaagtgaaccatgaacacagcaaatccaatgggaagtggtgccaatacctat |
40206978 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 148
Target Start/End: Complemental strand, 42798236 - 42798095
Alignment:
| Q |
7 |
tggtcatcccatgctttctcattgttgtaaatcacagcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaa |
106 |
Q |
| |
|
||||||||||| | || || |||||||| || ||||||| |||| ||||||||||| || || ||||| ||||||| || || || || | |||| |
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| T |
42798236 |
tggtcatcccagggcttatctttgttgtagataacagcagaaccaagacttctagcaggattgatgccagtgccagtgactgggatggttgccaaatgaa |
42798137 |
T |
|
| Q |
107 |
ccataaacactgcaaacccaattggaagtggtgccaaaacct |
148 |
Q |
| |
|
|||| || || ||||| ||||| ||||||||||||||||||| |
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|
| T |
42798136 |
ccatgaatacagcaaagccaatgggaagtggtgccaaaacct |
42798095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 41037913 - 41037813
Alignment:
| Q |
43 |
gcagctccaaagcttctagcagggttaataccagttccagtgataggaatagtagcaaggtgaaccataaacactgcaaacccaattggaagtggtgcca |
142 |
Q |
| |
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|||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| | ||| |||| ||||| ||||||||||| ||||| || |||| |
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| T |
41037913 |
gcagctccaagactcctagctgggttaatgcccgttcctgtgattggaattgtagccaagtggaccaagaacacagcaaacccaatgggaagaggagcca |
41037814 |
T |
|
| Q |
143 |
a |
143 |
Q |
| |
|
| |
|
|
| T |
41037813 |
a |
41037813 |
T |
|
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