View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_25 (Length: 323)
Name: NF1128_low_25
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 29 - 311
Target Start/End: Complemental strand, 679523 - 679240
Alignment:
| Q |
29 |
gatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcaga |
128 |
Q |
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| T |
679523 |
gatgattattggacaagaatagagggcatcccacattatttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcaga |
679424 |
T |
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| Q |
129 |
ttctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt |
228 |
Q |
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| T |
679423 |
ttctttcaacacttgctcttttgattatcatagtatcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt |
679324 |
T |
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| Q |
229 |
gaaatatagttatatgcctcattttca-nnnnnnnnnnctttctagttcttagaattagaagaatgctgcgtatatttgagtat |
311 |
Q |
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| T |
679323 |
gaaatgtagttatatgcctcattttcatttttttttttctttctagttctgagaattagaagaatgctgcgtatatttgagtat |
679240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 66 - 311
Target Start/End: Complemental strand, 751290 - 751047
Alignment:
| Q |
66 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
165 |
Q |
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| T |
751290 |
atttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcagattctttcaacacttgctcttttgattatcatagtatc |
751191 |
T |
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| Q |
166 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttatatgcctcattttcannnnnnnnnn |
265 |
Q |
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| T |
751190 |
atatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagtttgaaatatagttctatgcctcattttcatttattttt- |
751092 |
T |
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| Q |
266 |
ctttctagttcttagaattagaagaatgctgcgtatatttgagtat |
311 |
Q |
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| T |
751091 |
-tttctagttcttagaattagaagaatgctgcgtatatttgagtat |
751047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 68 - 228
Target Start/End: Original strand, 2632504 - 2632659
Alignment:
| Q |
68 |
ttcaattctccaaaccctgcagttctaaaatcagcgcactatatgttttgtgaagatcag----attctttcaacacttgctcttttgattatcatagta |
163 |
Q |
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| T |
2632504 |
ttcaattctccaaaccctgcagttttaaaatcagcaca----ttgttttgtgaagatcaggtcttttctttcaccactcgttctttgtattatcatag-- |
2632597 |
T |
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| Q |
164 |
tcatatacttcacatgtgtataaagaattcacaacatttagctttctaaaacttatagtgagttt |
228 |
Q |
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| T |
2632598 |
tcatacacttcacatgtgtgtgaataattc---atatttagctttttgaaacttatagtgagttt |
2632659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 747439 - 747402
Alignment:
| Q |
31 |
tgattattggacaagaatagagggcatcccacattatt |
68 |
Q |
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| T |
747439 |
tgattattggaaaagaatagagggcatcccacattatt |
747402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 9594931 - 9594898
Alignment:
| Q |
31 |
tgattattggacaagaatagagggcatcccacat |
64 |
Q |
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| T |
9594931 |
tgattattggacaagaatagaggacatcccacat |
9594898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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