View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1128_low_27 (Length: 315)

Name: NF1128_low_27

Description: NF1128

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1128_low_27

[»] chr1 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr1 (Bit Score: 143; Significance: 4e-75; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 143; E-Value: 4e-75

Query Start/End: Original strand, 33 - 218

Target Start/End: Original strand, 21662395 - 21662581

Alignment:

Q	33	aatgggtgtagagaatggcaatgtttggtagtagtattatctaatagagtgtgttgattgattgataggtttaaaatggatatttgaaccaaaagtgtac	132	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21662395	aatgggtgtagagaatgacaatgtttgctagtagtattatctaatagagtatgttgattgattgatagctgtaaaatggatatttgaaccaaaagtgtac	21662494	T

Q	133	tttataatctcgcacac-aaaatgggttcagtttagtttagttccaatgggatggataacttagataaatgtgtggataaagtaaac	218	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	21662495	tttataatctcacacacaaaaatgggttcagttttgtttagttccaatggaatgggtaacttagataaatgtgtggataaagtaaac	21662581	T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 31; E-Value: 0.00000003

Query Start/End: Original strand, 76 - 126

Target Start/End: Original strand, 27134937 - 27134987

Alignment:

Q	76	atagagtgtgttgattgattgataggtttaaaatggatatttgaaccaaaa	126	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27134937	atagagtatgttgattgattgctagctgttaaatggatatttgaaccaaaa	27134987	T

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