View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1128_low_28 (Length: 305)
Name: NF1128_low_28
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 293
Target Start/End: Original strand, 29965028 - 29965305
Alignment:
| Q |
16 |
atgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29965028 |
atgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccctgttggacccttattacttcctcgtgaatgtagagaaag |
29965127 |
T |
|
| Q |
116 |
cataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |
|
|
| T |
29965128 |
cataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatatttggttagaaaacgctgat |
29965227 |
T |
|
| Q |
216 |
gagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttca |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29965228 |
gagttttatccagagagatttagtgataagaaaatgaattatcaaggacagcaatttgaatctataccatttggttca |
29965305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 30009770 - 30009493
Alignment:
| Q |
16 |
atgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaag |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30009770 |
atgatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccctgttggacccttattacttcctcgtgaatgtagagaaag |
30009671 |
T |
|
| Q |
116 |
cataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||| |
|
|
| T |
30009670 |
cataacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatatttggttagaaaacgctgat |
30009571 |
T |
|
| Q |
216 |
gagttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttca |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30009570 |
gagttttatccagagagatttagtgataagaaaatgaattatcaaggacagcaatttgaatctataccatttggttca |
30009493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 30007314 - 30007584
Alignment:
| Q |
22 |
tgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataac |
121 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||| || ||||||||||| || ||||||||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
30007314 |
tgaagaagtttaattacttagatatggttgttgatgaaaccttaagactttatcctgttggacccttattaatccctcgtgaatgtagagagagcataac |
30007413 |
T |
|
| Q |
122 |
aattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttt |
221 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||| ||| |
|
|
| T |
30007414 |
aattgatggatattttataacgaaaaagactcgagttatagtaaatgcatgggctattgggagagattgtaacgtttggtcagaaaatgctgatgaattt |
30007513 |
T |
|
| Q |
222 |
tatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttc |
292 |
Q |
| |
|
|| ||||||||||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
30007514 |
tacccagagagatttattgacaagaaaatgaattatcaaggacatgagtttgaatctataccatttggttc |
30007584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 35 - 292
Target Start/End: Original strand, 29953779 - 29954036
Alignment:
| Q |
35 |
ttacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataacaattgatggatat |
134 |
Q |
| |
|
||||||||| ||||||||| |||| || |||||||||||||| |||| |||||||||||| ||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
29953779 |
ttacttagagatggtggttcatgaaactttaagactttaccctgttgcacccttattactccctcgtgaatgtagagagagtgtaacaattgatggatat |
29953878 |
T |
|
| Q |
135 |
tttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttttatccagagagat |
234 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||||| |
|
|
| T |
29953879 |
tttataaaggaaaagactcgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgccgaagaattttacccagagagat |
29953978 |
T |
|
| Q |
235 |
ttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttc |
292 |
Q |
| |
|
| | || |||||||||||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
29953979 |
tcattggcaagaaaatgaattatcaaggacaagagtttgaatctctaccatttggttc |
29954036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 24 - 292
Target Start/End: Complemental strand, 30043682 - 30043414
Alignment:
| Q |
24 |
aagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataacaa |
123 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | ||| ||| || | |||||||||| |||||| |||| ||||| |
|
|
| T |
30043682 |
aagaagttgaattatttagatatggtggttgatgagaccttaagactttaccccgtagcaccgttactagtccctcgtgaatctagagagagcacaacaa |
30043583 |
T |
|
| Q |
124 |
ttgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagtttta |
223 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| | || ||||| |
|
|
| T |
30043582 |
ttgatggttattttataaaggaaaagacacgacttatagtaaatgcatgggcaatagggagagatcctaatgtttggtcagaaaatgctaaagaatttta |
30043483 |
T |
|
| Q |
224 |
tccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttc |
292 |
Q |
| |
|
|||||||||||| || || ||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
30043482 |
cccagagagatttgtagagaaaaaaatgaattatcttggacaagagtttgaatctataccatttggttc |
30043414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 22 - 292
Target Start/End: Original strand, 29995525 - 29995794
Alignment:
| Q |
22 |
tgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataac |
121 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||| ||| ||| || | |||||||| | |||||| |||| || |
|
|
| T |
29995525 |
tgaagaagttgaattatttagatatggtggttgatgagaccttaagactttaccctgttgcaccattactagtccctcgtgagtctagagagagcacaat |
29995624 |
T |
|
| Q |
122 |
aattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttt |
221 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||||||||||||||| || || ||| |
|
|
| T |
29995625 |
aattgatggttattttataaaggaaaagacacgacttatagtaaatgcatgggcaatagggagagatcctaatgtttggtcagaaaatgccgaagaattt |
29995724 |
T |
|
| Q |
222 |
tatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttc |
292 |
Q |
| |
|
|||||||||||||||| ||| || ||| ||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
29995725 |
tatccagagagatttattgagaa-aaactgaattatctcggacaagagtttgaatctataccatttggttc |
29995794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 29946808 - 29947075
Alignment:
| Q |
25 |
agaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagcataacaat |
124 |
Q |
| |
|
||||||| | ||||||||||||||||||| |||| || |||||||||||||| |||| |||||| ||||| ||||||||||||||||| || |||||||| |
|
|
| T |
29946808 |
agaagttaagttacttagatatggtggttcatgaaactttaagactttaccctgttgcacccttgttactccctcgtgaatgtagagagagtataacaat |
29946907 |
T |
|
| Q |
125 |
tgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttttat |
224 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||| ||| || ||| || |
|
|
| T |
29946908 |
tgatggatattttataatggaaaagacacgagttatagtaaatgcatgggctatagagagagattctagtgtttggtcagaaaattatgaagaatttcat |
29947007 |
T |
|
| Q |
225 |
ccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttc |
292 |
Q |
| |
|
||||| ||||||| ||| | ||||||||||||| ||||||| | ||| ||||||||||||||||||| |
|
|
| T |
29947008 |
ccagaaagatttattgacatgaaaatgaattatgaaggacataagtttaaatctataccatttggttc |
29947075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 30001194 - 30001468
Alignment:
| Q |
18 |
gatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagca |
117 |
Q |
| |
|
||||||||||| || |||||| ||||||||||||||||||| || ||||||||||| || |||| ||| |||||| | ||||||||||||||||| | || |
|
|
| T |
30001194 |
gatttgaagaattttaattacctagatatggtggttgatgaaaccttaagactttatcctgttgcacctttattaatccctcgtgaatgtagagagaaca |
30001293 |
T |
|
| Q |
118 |
taacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatga |
217 |
Q |
| |
|
|||||||||||| |||| |||||| |||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||||||||| || |
|
|
| T |
30001294 |
taacaattgatgattattctataaaagaaaagacacgagttatagtaaatgcatgggcaattgggagagatcctgatgtttggtcagaaaatgctgaaga |
30001393 |
T |
|
| Q |
218 |
gttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttggttc |
292 |
Q |
| |
|
||||| ||||||||||||| ||| || ||||||||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
30001394 |
attttacccagagagatttattgagaaaaaaatgaattatctcggacaagagtttgaatctataccatttggttc |
30001468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 30068205 - 30067935
Alignment:
| Q |
18 |
gatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || |||||||| || || |||| ||||||| || | |||| | |||||||||| | || |
|
|
| T |
30068205 |
gatttgaagaagttgaattacttagatatggtggttgatgaaaccttaagactgtatcctgttgcacccttactagtccctcctaaatgtagagagaaca |
30068106 |
T |
|
| Q |
118 |
taacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatga |
217 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| || |||| |||||||||||||| |||||||||||| | ||||||||||||||||||||||| || |
|
|
| T |
30068105 |
taacaattgatgattattttataaaggaaaagacgagaattatggtaaatgcatgggcaatagggagagatcctaatgtttggtcagaaaatgctgaaga |
30068006 |
T |
|
| Q |
218 |
gttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttg |
288 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||||||||||||| ||||||| |||||| | ||||||||| |
|
|
| T |
30068005 |
attttatccaaagagatttattgaaaagaaaatgaattatcaaagacaagagtttgaaagtttaccatttg |
30067935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 289
Target Start/End: Original strand, 29944829 - 29945100
Alignment:
| Q |
18 |
gatttgaagaagttgaattacttagatatggtggttgatgagacattaagactttaccccgttggacccttattacttcctcgtgaatgtagagaaagca |
117 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||||| || ||||||||| | || ||| |||||| ||||| ||||||||||||||||| | || |
|
|
| T |
29944829 |
gatttgaagaattttaattacttagatatggtggttgatgaaactttaagacttcatccagtttcacccttcttactccctcgtgaatgtagagagaaca |
29944928 |
T |
|
| Q |
118 |
taacaattgatggatattttataaaggaaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatga |
217 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||| | |||| ||||||| | ||||||||||||||||||||||| || |
|
|
| T |
29944929 |
taacaattgatggttattttgtaaaggaaaagacacgagttatagtaaatgcatttacaatagcgagagatcctaatgtttggtcagaaaatgctgaaga |
29945028 |
T |
|
| Q |
218 |
gttttatccagagagatttagtgataagaaaatgaattatcaaggacaagaatttgaatctataccatttgg |
289 |
Q |
| |
|
|||| ||||||||| |||| | |||||||| |||||||| |||||||||| |||||| |||||||||||| |
|
|
| T |
29945029 |
attttgtccagagaggtttattaataagaaattgaattatgaaggacaagagtttgaaagtataccatttgg |
29945100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 31890612 - 31890703
Alignment:
| Q |
145 |
aaaagacacgagttatagtaaatgcatgggctatagggagagattcaaatgtttggtcagaaaatgctgatgagttttatccagagagattt |
236 |
Q |
| |
|
|||||||| || || || ||||||||||| | ||||||||||| | ||||||||||| || |||||||| ||||||||||||||||||| |
|
|
| T |
31890612 |
aaaagacaagaattttaataaatgcatggacaatagggagagacactaatgtttggtcggataatgctgagacgttttatccagagagattt |
31890703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University