View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_29 (Length: 304)
Name: NF1128_low_29
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 36 - 240
Target Start/End: Original strand, 50447594 - 50447798
Alignment:
| Q |
36 |
catttatctctgcatctggtgccagaattttgacatggatgagaatcacatttgcatttcttgtgaggagattatcaatagcccatttgaatgcacggtg |
135 |
Q |
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| T |
50447594 |
catttatctctgcatctggtggcagaattttaacatggatgagaatcacatttgcatttcttgtgaggagattatcaatagcccatttgaatgcacggtg |
50447693 |
T |
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| Q |
136 |
gctctccttttcgttgtttactgccactgctattaatccatttacaccatccttcttcttcggcaacgacattcctctctttgcacgaaaactcttgatg |
235 |
Q |
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| T |
50447694 |
gctctccttttcgttgtttactgccactgctattaatccatttacaccatccttcttctttggtaacgacattcctctctttgcaccaaaactcttgatg |
50447793 |
T |
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| Q |
236 |
ttctt |
240 |
Q |
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||||| |
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| T |
50447794 |
ttctt |
50447798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 61 - 185
Target Start/End: Original strand, 50422666 - 50422790
Alignment:
| Q |
61 |
aattttgacatggatgagaatcacatttgcatttcttgtgaggagattatcaatagcccatttgaatgcacggtggctctccttttcgttgtttactgcc |
160 |
Q |
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||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||| || | || |||| |
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| T |
50422666 |
aattttgacatggatgagaattacagttgcattttttgtgaggagattatcaatagcccatttgaaagcacgatggcttcccttttcattatctattgcc |
50422765 |
T |
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| Q |
161 |
actgctattaatccatttacaccat |
185 |
Q |
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| T |
50422766 |
actgctactaatccatttacaccat |
50422790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 50443013 - 50443141
Alignment:
| Q |
66 |
tgacatggatgagaatcacatttgcatttcttgtgaggagattatcaatagcccatttgaatgcacggtggctctccttttcgttgtttactgccactgc |
165 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||| |||| | ||||||||| |||| ||||| ||||||| |||| | ||||||||| |
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| T |
50443013 |
tgacatggatgagaattacagttgcatttcttgtgaggagattgtcaacaacccatttgagtgcattttggcttcccttttctttgtcaattgccactgc |
50443112 |
T |
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| Q |
166 |
tattaatccatttacaccatccttcttct |
194 |
Q |
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|||||| || ||||| || ||||| |||| |
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| T |
50443113 |
tattaacccctttaccccttccttgttct |
50443141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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