View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1128_low_3 (Length: 540)

Name: NF1128_low_3
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1128_low_3
NF1128_low_3
[»] chr7 (15 HSPs)
chr7 (30-425)||(46818630-46819025)
chr7 (446-540)||(46818507-46818601)
chr7 (470-540)||(31235883-31235953)
chr7 (470-540)||(6001937-6002007)
chr7 (470-540)||(36143782-36143851)
chr7 (472-539)||(35667324-35667390)
chr7 (470-539)||(20116499-20116567)
chr7 (470-539)||(23425464-23425532)
chr7 (470-539)||(1485349-1485417)
chr7 (470-527)||(2843332-2843388)
chr7 (470-539)||(3860868-3860935)
chr7 (473-526)||(32684604-32684656)
chr7 (470-527)||(35496280-35496336)
chr7 (476-540)||(32522018-32522081)
chr7 (488-540)||(43369857-43369908)
[»] chr3 (20 HSPs)
chr3 (470-540)||(46178490-46178560)
chr3 (471-540)||(37169145-37169214)
chr3 (470-539)||(38440670-38440738)
chr3 (470-525)||(22802935-22802990)
chr3 (470-527)||(4172480-4172536)
chr3 (474-527)||(17237720-17237772)
chr3 (470-527)||(25631632-25631688)
chr3 (472-528)||(39917500-39917555)
chr3 (485-540)||(47980754-47980809)
chr3 (485-540)||(47990041-47990096)
chr3 (485-540)||(47999328-47999383)
chr3 (485-540)||(48008615-48008670)
chr3 (470-527)||(25162350-25162405)
chr3 (470-527)||(3850560-3850616)
chr3 (470-527)||(35499306-35499362)
chr3 (470-527)||(36906035-36906091)
chr3 (470-539)||(46934556-46934624)
chr3 (470-506)||(2342405-2342441)
chr3 (470-506)||(4178478-4178514)
chr3 (485-513)||(16235323-16235351)
[»] chr8 (11 HSPs)
chr8 (485-540)||(33342375-33342430)
chr8 (485-540)||(15597258-15597312)
chr8 (470-539)||(16794216-16794284)
chr8 (470-539)||(35580381-35580449)
chr8 (470-525)||(28239756-28239811)
chr8 (469-539)||(11725604-11725673)
chr8 (473-539)||(43192438-43192503)
chr8 (485-527)||(9498707-9498748)
chr8 (485-539)||(11196828-11196881)
chr8 (470-527)||(9619463-9619519)
chr8 (471-527)||(17949171-17949226)
[»] chr4 (22 HSPs)
chr4 (473-540)||(18139004-18139071)
chr4 (473-540)||(49126217-49126284)
chr4 (470-540)||(35965066-35965136)
chr4 (470-539)||(21090081-21090149)
chr4 (470-527)||(38706815-38706871)
chr4 (470-539)||(51317914-51317982)
chr4 (487-538)||(35261137-35261187)
chr4 (470-527)||(2115693-2115749)
chr4 (485-538)||(12265398-12265451)
chr4 (470-539)||(34024529-34024597)
chr4 (470-537)||(1008223-1008289)
chr4 (470-516)||(8009475-8009520)
chr4 (470-528)||(10389857-10389914)
chr4 (473-527)||(25273811-25273864)
chr4 (473-527)||(43154126-43154179)
chr4 (470-527)||(9528983-9529039)
chr4 (470-539)||(10359639-10359707)
chr4 (470-539)||(31381764-31381832)
chr4 (470-527)||(56194527-56194583)
chr4 (485-540)||(2624441-2624496)
chr4 (470-506)||(14183731-14183767)
chr4 (472-527)||(23100617-23100673)
[»] chr5 (18 HSPs)
chr5 (470-516)||(19259928-19259974)
chr5 (470-540)||(15570828-15570898)
chr5 (470-536)||(21060377-21060442)
chr5 (485-539)||(30298142-30298195)
chr5 (470-527)||(20257799-20257855)
chr5 (470-536)||(11767726-11767793)
chr5 (472-527)||(27266965-27267019)
chr5 (472-527)||(42579801-42579855)
chr5 (470-539)||(2057930-2057999)
chr5 (470-527)||(7241701-7241757)
chr5 (470-527)||(7246877-7246933)
chr5 (473-538)||(7613151-7613214)
chr5 (470-527)||(10649372-10649428)
chr5 (470-527)||(18677571-18677627)
chr5 (470-527)||(26578168-26578224)
chr5 (470-527)||(30371643-30371699)
chr5 (473-530)||(34881631-34881687)
chr5 (485-540)||(28097086-28097141)
[»] chr1 (20 HSPs)
chr1 (134-276)||(36882711-36882853)
chr1 (470-539)||(39987310-39987378)
chr1 (471-539)||(34519054-34519121)
chr1 (470-540)||(18569401-18569471)
chr1 (470-539)||(14545440-14545508)
chr1 (470-527)||(19716002-19716058)
chr1 (470-527)||(28035059-28035115)
chr1 (470-539)||(38520626-38520694)
chr1 (315-383)||(36882892-36882960)
chr1 (470-537)||(27872659-27872725)
chr1 (470-516)||(9919309-9919354)
chr1 (470-527)||(25406389-25406445)
chr1 (470-527)||(25728064-25728120)
chr1 (470-527)||(35584726-35584782)
chr1 (470-527)||(50166204-50166260)
chr1 (470-527)||(51868750-51868806)
chr1 (470-539)||(51871784-51871852)
chr1 (470-506)||(5324682-5324718)
chr1 (470-539)||(11453854-11453924)
chr1 (470-506)||(30818470-30818506)
[»] chr6 (15 HSPs)
chr6 (470-527)||(33740683-33740739)
chr6 (470-539)||(34489164-34489235)
chr6 (473-539)||(23947410-23947475)
chr6 (470-540)||(33543711-33543780)
chr6 (470-527)||(8196512-8196568)
chr6 (485-530)||(12165772-12165816)
chr6 (470-539)||(33109750-33109818)
chr6 (470-516)||(8028234-8028279)
chr6 (470-516)||(12652856-12652901)
chr6 (470-539)||(16419074-16419143)
chr6 (470-539)||(4468475-4468543)
chr6 (470-507)||(8266551-8266588)
chr6 (470-527)||(8496881-8496937)
chr6 (470-539)||(17237377-17237445)
chr6 (470-527)||(25064151-25064207)
[»] scaffold0311 (1 HSPs)
scaffold0311 (470-539)||(8636-8704)
[»] scaffold0146 (1 HSPs)
scaffold0146 (474-527)||(16427-16479)
[»] chr2 (16 HSPs)
chr2 (470-539)||(3725101-3725169)
chr2 (470-539)||(4192759-4192827)
chr2 (470-527)||(6173552-6173608)
chr2 (470-527)||(20047187-20047243)
chr2 (470-539)||(26025502-26025570)
chr2 (470-539)||(31581812-31581880)
chr2 (470-528)||(7015814-7015871)
chr2 (473-539)||(22421659-22421724)
chr2 (470-516)||(34598908-34598953)
chr2 (469-539)||(40626120-40626189)
chr2 (473-527)||(41712870-41712923)
chr2 (472-540)||(17319246-17319312)
chr2 (470-527)||(27249256-27249312)
chr2 (470-527)||(30420597-30420653)
chr2 (470-527)||(32680687-32680743)
chr2 (472-516)||(18694970-18695013)
[»] scaffold0014 (1 HSPs)
scaffold0014 (470-539)||(201464-201532)


Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 30 - 425
Target Start/End: Complemental strand, 46819025 - 46818630
Alignment:
Q  30 gtggcatcgattgccatcgaaattaaactacatgaaatcatttaagcaagtaggtaacaatcataagcacgaggtcccgaatgatgtgtatactttacat 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46819025 gtggcatcgattgccatcgaaattaaactacatgaaatcatttaagcaagtaggtaacaatcataagcacgaggtcccgaatgatgtgtatactttacat 46818926  T
Q  130 tatctgggcttgaaaccatggatgtgttatagggattatgattgcaattgggacatgcaaggttatgatatatttgctagtgactcagctaatgaagtgt 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46818925 tatctgggcttgaaaccatggatgtgttatagggattatgattgcaattgggacatgcaaggttatgatatatttgctagtgactcagctaatgaagtat 46818826  T
Q  230 ggtggaaagtttatgatactatgccaaaacatttgcaatcatattgttcccttacaaagcaatcaaatgaaagaattgtcaagaatagaaaaatagcaag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46818825 ggtggaaagtttatgatactatgccaaaacatttgcaatcatattgttcccttacaaagcaatcaaatgaaagaattgtcaagaatagaaaaatagcaag 46818726  T
Q  330 aaatgctattttctctgatggacattggagaattgaggttaaggatcctagaaggttgaactacatagattagattataatattatggtgtacaag 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  46818725 aaatgctattttctctgatggacattggagaattgaggttaaggatcctagaaggttgaactacatagattagattataataacatggtgtacaag 46818630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 446 - 540
Target Start/End: Complemental strand, 46818601 - 46818507
Alignment:
Q  446 gttgaaagaaacatggtgtacaagtctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  46818601 gttgaaagaaacatggtgtacaagtctttttctctctcgctcaatctaaataagtgatttttcacataaattttggttttttcttcatgatttcg 46818507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 470 - 540
Target Start/End: Complemental strand, 31235953 - 31235883
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    |||||||||||||  |||||||||||||||||||||||||||||||| | |||||| ||| | ||||||||    
T  31235953 tctttttctctctatttcaatctaaataagtgatttttcacatagatctaggttttctctacgtgatttcg 31235883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 470 - 540
Target Start/End: Original strand, 6001937 - 6002007
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    |||||||||| ||  || ||||||||||||||||||||||||||||||| |||||| ||| | ||||||||    
T  6001937 tctttttctccctattttaatctaaataagtgatttttcacatagatttaggttttctctacgtgatttcg 6002007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 470 - 540
Target Start/End: Original strand, 36143782 - 36143851
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    |||||||||||||  ||||||||||||||||| |||||||| ||||| | |||||||||||| ||||||||    
T  36143782 tctttttctctctaattcaatctaaataagtg-tttttcacgtagatctaggttttttcttcgtgatttcg 36143851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 539
Target Start/End: Complemental strand, 35667390 - 35667324
Alignment:
Q  472 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  35667390 tttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttc 35667324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 20116499 - 20116567
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||| |||  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  20116499 tctttttctatctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttc 20116567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 23425532 - 23425464
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||| |  ||||||||||||||||||||||| |||||||| | |||||||||||  |||||||    
T  23425532 tctttttctctatatttcaatctaaataagtgattttt-acatagatctaggttttttctttgtgatttc 23425464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 1485417 - 1485349
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | | |||||||||  |||||||    
T  1485417 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctagattttttctttgtgatttc 1485349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 2843388 - 2843332
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  2843388 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 2843332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 3860868 - 3860935
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||| |  |||||| ||||||||||| ||||||||||||| |||| ||||||||| |||||||    
T  3860868 tctttttctctttgtttcaatataaataagtga-ttttcacatagatcttgg-tttttcttcgtgatttc 3860935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 526
Target Start/End: Original strand, 32684604 - 32684656
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttt 526  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | |||||||    
T  32684604 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttt 32684656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 35496336 - 35496280
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||| ||||||| ||||||||||||| | ||||||||    
T  35496336 tctttttctctctatttcaatctaattaagtga-ttttcacatagatctaggtttttt 35496280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 476 - 540
Target Start/End: Complemental strand, 32522081 - 32522018
Alignment:
Q  476 tctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    |||||||  |||||| ||||||||||||||| |||||||||||  ||||||||||| | ||||||    
T  32522081 tctctctatttcaatttaaataagtgatttt-cacatagatttatgttttttcttcgttatttcg 32522018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 488 - 540
Target Start/End: Complemental strand, 43369908 - 43369857
Alignment:
Q  488 aatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||||||||||| ||||||||| |  ||||||||||| ||||||||    
T  43369908 aatctaaataagtgatttt-cacatagatataagttttttcttcgtgatttcg 43369857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 470 - 540
Target Start/End: Original strand, 46178490 - 46178560
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||| | |||||||||||| ||||||||    
T  46178490 tctttttctctctaattcaatctaaataagtgctttttcacatagatctaggttttttcttcgtgatttcg 46178560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 471 - 540
Target Start/End: Original strand, 37169145 - 37169214
Alignment:
Q  471 ctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||||  |||||| ||||||||||||||||||||||||| | | |||||||||| ||||||||    
T  37169145 ctttttctctctaattcaatataaataagtgatttttcacatagatctagattttttcttcttgatttcg 37169214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 38440738 - 38440670
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  38440738 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttc 38440670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 22802935 - 22802990
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttt 525  Q
    |||||||||||||  |||||||||||||||||||||||||| ||||| | ||||||    
T  22802935 tctttttctctctatttcaatctaaataagtgatttttcacgtagatctaggtttt 22802990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 4172480 - 4172536
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  4172480 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 4172536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 527
Target Start/End: Original strand, 17237720 - 17237772
Alignment:
Q  474 tttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  17237720 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 17237772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 25631688 - 25631632
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25631688 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25631632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 528
Target Start/End: Complemental strand, 39917555 - 39917500
Alignment:
Q  472 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttc 528  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||    
T  39917555 tttttctctctaattcaatctaaataagtga-ttttcacatagatctaggttttttc 39917500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 47980809 - 47980754
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||    
T  47980809 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcg 47980754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 47990096 - 47990041
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||    
T  47990096 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcg 47990041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 47999383 - 47999328
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||    
T  47999383 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcg 47999328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 48008670 - 48008615
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||||||||||||||||||||| || | ||| |||| ||| ||||||||    
T  48008670 ttcaatctaaataagtgatttttcacataaatctaggtcttttattcgtgatttcg 48008615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 25162350 - 25162405
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  25162350 tctttttctctctatttcaatctaaataagtga--tttcacatagatctaggtttttt 25162405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 3850616 - 3850560
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  3850616 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 3850560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 35499362 - 35499306
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  35499362 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 35499306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 36906035 - 36906091
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||| ||||||||||| ||||||||||||||| ||||||||    
T  36906035 tctttttctctttatttcaatataaataagtga-ttttcacatagatttaggtttttt 36906091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 46934556 - 46934624
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||| |||||||  |||||||||||||||||| |||||||||||||   |||||||||||  |||||||    
T  46934556 tctttctctctctatttcaatctaaataagtga-ttttcacatagatccaggttttttcttgttgatttc 46934624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 506
Target Start/End: Original strand, 2342405 - 2342441
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttt 506  Q
    |||||||||||||  ||||||||||||||||||||||    
T  2342405 tctttttctctctatttcaatctaaataagtgatttt 2342441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 506
Target Start/End: Original strand, 4178478 - 4178514
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttt 506  Q
    |||||||||||||  ||||||||||||||||||||||    
T  4178478 tctttttctctctatttcaatctaaataagtgatttt 4178514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 513
Target Start/End: Original strand, 16235323 - 16235351
Alignment:
Q  485 ttcaatctaaataagtgatttttcacata 513  Q
    |||||||||||||||||||||||||||||    
T  16235323 ttcaatctaaataagtgatttttcacata 16235351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 33342375 - 33342430
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| ||||||||    
T  33342375 ttcaatctaaataagtgatttttcacatagatctaggttttttcttcgtgatttcg 33342430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 540
Target Start/End: Complemental strand, 15597312 - 15597258
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    |||||||||||||||||||||| ||||||||| | |||||||||||||||||||||    
T  15597312 ttcaatctaaataagtgatttt-cacatagatctaggttttttcttcatgatttcg 15597258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 16794216 - 16794284
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  ||||||||||||||||||||||||||||| || | || ||||||||| |||||||    
T  16794216 tctttttctctctaattcaatctaaataagtgatttttcacataaatctagg-tttttcttcgtgatttc 16794284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 35580381 - 35580449
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||| | |||||||||||| |||||||    
T  35580381 tctttttctctctatttcaatttaaataagtga-ttttcacatagatctaggttttttcttcgtgatttc 35580449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 525
Target Start/End: Original strand, 28239756 - 28239811
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttt 525  Q
    |||||||||||||  ||||||||||||||||| |||||||||||||| | ||||||    
T  28239756 tctttttctctctatttcaatctaaataagtgttttttcacatagatctaggtttt 28239811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 539
Target Start/End: Original strand, 11725604 - 11725673
Alignment:
Q  469 gtctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||| |  ||||||||||||||||| |||||||||||||| | |||||||||||  |||||||    
T  11725604 gtctttttctctttatttcaatctaaataagtg-tttttcacatagatctaggttttttctttttgatttc 11725673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 539
Target Start/End: Complemental strand, 43192503 - 43192438
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||  ||||||||||||||||| ||||| |||||||| | |||||||||||| |||||||    
T  43192503 ttttctctctatttcaatctaaataagtggttttt-acatagatctaggttttttcttcgtgatttc 43192438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 527
Target Start/End: Complemental strand, 9498748 - 9498707
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||||||| ||||||||||||||| ||||||||    
T  9498748 ttcaatctaaataagtga-ttttcacatagatttaggtttttt 9498707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 11196828 - 11196881
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  11196828 ttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttc 11196881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 9619519 - 9619463
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| | ||||||    
T  9619519 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttagatttttt 9619463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 527
Target Start/End: Original strand, 17949171 - 17949226
Alignment:
Q  471 ctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||||  ||||||||||||||| || ||||||||||||| ||| ||||||    
T  17949171 ctttttctctctatttcaatctaaataagcga-ttttcacatagatcttgatttttt 17949226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 473 - 540
Target Start/End: Complemental strand, 18139071 - 18139004
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||  ||||||||||||||||||||||||||||| || | ||||||||||| |||||||||    
T  18139071 ttttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttcttaatgatttcg 18139004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 473 - 540
Target Start/End: Complemental strand, 49126284 - 49126217
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||  ||||||||||||||||||||||||||||| || | ||||||||||| |||||||||    
T  49126284 ttttctctctatttcaatctaaataagtgatttttcacatacatctaggttttttcttaatgatttcg 49126217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 470 - 540
Target Start/End: Complemental strand, 35965136 - 35965066
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    |||||||||||||  |||||||| ||||||||||||||||||||||| | |||||||| ||| ||||||||    
T  35965136 tctttttctctctatttcaatctgaataagtgatttttcacatagatctaggtttttttttcgtgatttcg 35965066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 21090081 - 21090149
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||| ||||||||||||||| ||||||||||| |||||||||||| |||||||    
T  21090081 tctttttctctctatttcaatataaataagtgatttt-cacatagatttaggttttttcttcgtgatttc 21090149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 38706871 - 38706815
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  38706871 tctttttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 38706815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 51317914 - 51317982
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  51317914 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttc 51317982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 487 - 538
Target Start/End: Original strand, 35261137 - 35261187
Alignment:
Q  487 caatctaaataagtgatttttcacatagattttggttttttcttcatgattt 538  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| ||||||    
T  35261137 caatctaaataagtgatttt-cacatagatttaggttttttcttcgtgattt 35261187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 2115749 - 2115693
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| ||||||||    
T  2115749 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttaggtttttt 2115693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 538
Target Start/End: Original strand, 12265398 - 12265451
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgattt 538  Q
    |||||||||||||||||||||||||||||||| | |||||| ||| | ||||||    
T  12265398 ttcaatctaaataagtgatttttcacatagatctaggttttctctacgtgattt 12265451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 34024597 - 34024529
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||||||||||||| | ||||||||||||| | |||||||||||  |||||||    
T  34024597 tctttttctctctatttcaatctaaataagtta-ttttcacatagatctaggttttttctttttgatttc 34024529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 1008223 - 1008289
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatt 537  Q
    |||||||||||||  || ||||||||||||||| |||||||||| |||| | |||||||||| |||||    
T  1008223 tctttttctctctattttaatctaaataagtga-ttttcacataaatttagtttttttcttcgtgatt 1008289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Complemental strand, 8009520 - 8009475
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 516  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||    
T  8009520 tctttttctctctatttcaatctaaataagtga-ttttcacatagat 8009475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 10389914 - 10389857
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttc 528  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | |||||||||    
T  10389914 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggttttttc 10389857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 527
Target Start/End: Original strand, 25273811 - 25273864
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25273811 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25273864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 527
Target Start/End: Complemental strand, 43154179 - 43154126
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  43154179 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 43154126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 9529039 - 9528983
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| |||||||||||||||  |||||||    
T  9529039 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttatgtttttt 9528983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 10359707 - 10359639
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  ||| |||||||||||||| |||| ||||| || | |||||||||||| |||||||    
T  10359707 tctttttctctctatttcgatctaaataagtga-ttttaacatatatctaggttttttcttcgtgatttc 10359639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 31381832 - 31381764
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||| |  ||||||||||  |||||||    
T  31381832 tctttttctctctttttcaatttaaataagtga-ttttcacatagatctaagttttttctttgtgatttc 31381764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 56194527 - 56194583
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  56194527 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 56194583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 2624441 - 2624496
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttgg-ttttttcttcatgatttcg 540  Q
    |||||||||||||||||| ||||||||||||| | || |||||||||| ||||||||    
T  2624441 ttcaatctaaataagtga-ttttcacatagatctaggtttttttcttcgtgatttcg 2624496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 506
Target Start/End: Original strand, 14183731 - 14183767
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttt 506  Q
    |||||||||||||  ||||||||||||||||||||||    
T  14183731 tctttttctctctatttcaatctaaataagtgatttt 14183767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 23100617 - 23100673
Alignment:
Q  472 tttttctctctcgttcaatctaaataagtga-tttttcacatagattttggtttttt 527  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||||||  |||||||    
T  23100617 tttttctctctaattcaatctaaataagtgatttttttacatagatttatgtttttt 23100673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 470 - 516
Target Start/End: Complemental strand, 19259974 - 19259928
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 516  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||    
T  19259974 tctttttctctctatttcaatctaaataagtgatttttcacatagat 19259928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 540
Target Start/End: Original strand, 15570828 - 15570898
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||| |  |||||||||||||  ||||||||||||||||| | |||||||||||  ||||||||    
T  15570828 tctttttctctataattcaatctaaatatttgatttttcacatagatgtaggttttttctttgtgatttcg 15570898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 536
Target Start/End: Complemental strand, 21060442 - 21060377
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgat 536  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||| ||||    
T  21060442 tctttttctctatatttcaatctaaataagtga-ttttcacatagatgtaggttttttcttcgtgat 21060377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 539
Target Start/End: Original strand, 30298142 - 30298195
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||    
T  30298142 ttcaatctaaataagtgatttt-cacatagatctaggttttttctttatgatttc 30298195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 20257855 - 20257799
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  20257855 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 20257799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 536
Target Start/End: Original strand, 11767726 - 11767793
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagat-tttggttttttcttcatgat 536  Q
    ||||||||||| |  |||||||||||||||||||||||||| ||||| | || |||||||||| ||||    
T  11767726 tctttttctctatatttcaatctaaataagtgatttttcacgtagatatatgtttttttcttcgtgat 11767793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Complemental strand, 27267019 - 27266965
Alignment:
Q  472 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  27267019 tttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 27266965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 42579801 - 42579855
Alignment:
Q  472 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||| |||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  42579801 tttttctttctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 42579855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 2057999 - 2057930
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttgg-ttttttcttcatgatttc 539  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | || ||||||||| ||||||||    
T  2057999 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttttctttatgatttc 2057930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 7241701 - 7241757
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  7241701 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 7241757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 7246877 - 7246933
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  7246877 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 7246933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 538
Target Start/End: Complemental strand, 7613214 - 7613151
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgattt 538  Q
    ||||||||||  ||||||||||||||||| ||||||| |||||| | || ||||||||||||||||    
T  7613214 ttttctctctgtttcaatctaaataagtg-tttttcatatagatctagg-tttttcttcatgattt 7613151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 10649372 - 10649428
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  10649372 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 10649428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 18677627 - 18677571
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  || ||||||||||||||| ||||||||||||| | ||||||||    
T  18677627 tctttttctctctattttaatctaaataagtga-ttttcacatagatctaggtttttt 18677571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 26578168 - 26578224
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  26578168 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 26578224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 30371643 - 30371699
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  30371643 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 30371699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 530
Target Start/End: Original strand, 34881631 - 34881687
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttctt 530  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | | |||||||||    
T  34881631 ttttctctctatttcaatctaaataagtga-ttttcacatagatctagtttttttctt 34881687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 540
Target Start/End: Original strand, 28097086 - 28097141
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggtt-ttttcttcatgatttcg 540  Q
    |||||| ||||||||||| |||||||||| |||| |||| |||||||||||||||||    
T  28097086 ttcaatataaataagtga-ttttcacataaatttaggttattttcttcatgatttcg 28097141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 134 - 276
Target Start/End: Original strand, 36882711 - 36882853
Alignment:
Q  134 tgggcttgaaaccatggatgtgttatagggattatgattgcaattgggacatgcaaggttatgatatatttgctagtgactcagctaatgaagtgtggtg 233  Q
    |||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||  ||  |   || | ||||| ||||| |  ||| |  || |||||||    
T  36882711 tgggtttgaagccatggatgtgttatagagattatgattgtaattgggacatgagagaattacatgtttttgcgagtgatttggctcacaaaatgtggtg 36882810  T
Q  234 gaaagtttatgatactatgccaaaacatttgcaatcatattgt 276  Q
    ||| |||||||||||||||||| || | |||||| ||||||||    
T  36882811 gaaggtttatgatactatgccacaaaagttgcaagcatattgt 36882853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 39987310 - 39987378
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  ||||||||||||||||||||||||| ||||| | | ||||||||||| |||||||    
T  39987310 tctttttctctctgattcaatctaaataagtgatttttcatataga-tctagttttttcttcgtgatttc 39987378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 471 - 539
Target Start/End: Original strand, 34519054 - 34519121
Alignment:
Q  471 ctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  34519054 ctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttc 34519121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 470 - 540
Target Start/End: Complemental strand, 18569471 - 18569401
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttt-ttcttcatgatttcg 540  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | |||||| |||||| ||||||||    
T  18569471 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttcttcttcgtgatttcg 18569401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 14545440 - 14545508
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  14545440 tctttttctctatatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttc 14545508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 19716058 - 19716002
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||||| ||||||||    
T  19716058 tctttttctctttatttcaatctaaataagtga-ttttcacatagatttaggtttttt 19716002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 28035059 - 28035115
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  28035059 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 28035115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 38520694 - 38520626
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  ||| |||||||||||||| ||||||||||||| |  ||||||||||| |||||||    
T  38520694 tctttttctctctatttcgatctaaataagtga-ttttcacatagatctatgttttttcttcgtgatttc 38520626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 383
Target Start/End: Original strand, 36882892 - 36882960
Alignment:
Q  315 tagaaaaatagcaagaaatgctattttctctgatggacattggagaattgaggttaaggatcctagaag 383  Q
    |||||||| |||||||||||||| |||   |||||| |||||||  ||| |||||||||||||||||||    
T  36882892 tagaaaaagagcaagaaatgctaatttgagtgatgggcattggaagattaaggttaaggatcctagaag 36882960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 470 - 537
Target Start/End: Original strand, 27872659 - 27872725
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatt 537  Q
    |||||||| ||||  |||||||||||||||||| ||||||||||||| |  ||||||||||| |||||    
T  27872659 tctttttcgctctatttcaatctaaataagtga-ttttcacatagatctaagttttttcttcgtgatt 27872725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Original strand, 9919309 - 9919354
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 516  Q
    |||||||||||||  ||||||||||||||||||||||| ||||||||    
T  9919309 tctttttctctctatttcaatctaaataagtgattttt-acatagat 9919354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 25406445 - 25406389
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  25406445 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 25406389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 25728120 - 25728064
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25728120 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25728064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 35584782 - 35584726
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  35584782 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 35584726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 50166260 - 50166204
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||| |||  ||||||||||||||||||  |||||||||||||| ||||||||    
T  50166260 tctttttctatctatttcaatctaaataagtga-atttcacatagatttaggtttttt 50166204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 51868806 - 51868750
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  51868806 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 51868750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 51871784 - 51871852
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | | |||||||||  |||||||    
T  51871784 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctagcttttttctttgtgatttc 51871852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 506
Target Start/End: Complemental strand, 5324718 - 5324682
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttt 506  Q
    |||||||||||||  ||||||||||||||||||||||    
T  5324718 tctttttctctctatttcaatctaaataagtgatttt 5324682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 11453854 - 11453924
Alignment:
Q  470 tctttttctctctcg--ttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||||||   ||||||||||||||||| |||| ||||||||| | |||||||||||  |||||||    
T  11453854 tctttttctctctctatttcaatctaaataagtggtttt-cacatagatctaggttttttctttgtgatttc 11453924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 506
Target Start/End: Complemental strand, 30818506 - 30818470
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttt 506  Q
    |||||||||||||  ||||||||||||||||||||||    
T  30818506 tctttttctctctatttcaatctaaataagtgatttt 30818470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 33740739 - 33740683
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  33740739 tctttttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 33740683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 34489164 - 34489235
Alignment:
Q  470 tctttttctctctcgttcaatcta--aataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||| ||  ||||||||||||||||||||||| | |||||||||||| |||||||    
T  34489164 tctttttctctctaattcaatatataaataagtgatttttcacatagatctaggttttttcttcgtgatttc 34489235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 473 - 539
Target Start/End: Complemental strand, 23947475 - 23947410
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  23947475 ttttctctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttttgatttc 23947410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 540
Target Start/End: Complemental strand, 33543780 - 33543711
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||||||| |  |||||||||||||||| |||||||||||||||||  | ||||||||| ||||||||    
T  33543780 tctttttctctatatttcaatctaaataagtaatttttcacatagatttaag-tttttcttcgtgatttcg 33543711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 8196568 - 8196512
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  8196568 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 8196512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 530
Target Start/End: Original strand, 12165772 - 12165816
Alignment:
Q  485 ttcaatctaaataagtgatttttcacatagattttggttttttctt 530  Q
    |||||||||||||||||||||| ||||||||||| |||||||||||    
T  12165772 ttcaatctaaataagtgatttt-cacatagatttaggttttttctt 12165816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 33109750 - 33109818
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  33109750 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttc 33109818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Complemental strand, 8028279 - 8028234
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 516  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||    
T  8028279 tctttttctctctgtttcaatctaaataagtga-ttttcacatagat 8028234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Original strand, 12652856 - 12652901
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 516  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||    
T  12652856 tctttttctctctatttcaatctaaataagtga-ttttcacatagat 12652901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 16419074 - 16419143
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagat-tttggttttttcttcatgatttc 539  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| |||| |||||||||  |||||||    
T  16419074 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctttgtttttttctttgtgatttc 16419143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 4468475 - 4468543
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||| ||||||||  |||||||||||||||||| |||||| |||||| | |||||||||||  |||||||    
T  4468475 tcttgttctctctatttcaatctaaataagtga-ttttcatatagatctaggttttttctttgtgatttc 4468543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 507
Target Start/End: Original strand, 8266551 - 8266588
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgattttt 507  Q
    |||||||||||||  |||||||||||||||||||||||    
T  8266551 tctttttctctctacttcaatctaaataagtgattttt 8266588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 8496881 - 8496937
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  8496881 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 8496937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 17237445 - 17237377
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||| |  |||||||||||||||| | ||||||||||||| | |||||||||||  |||||||    
T  17237445 tctttttctctatatttcaatctaaataagtta-ttttcacatagatctaggttttttctttgtgatttc 17237377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 25064151 - 25064207
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  25064151 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 25064207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 8636 - 8704
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||| |||||  |||||||||||||||||| ||||||||||||| | |||||||||||  |||||||    
T  8636 tctttttatctctatttcaatctaaataagtga-ttttcacatagatctaggttttttctttgtgatttc 8704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 527
Target Start/End: Complemental strand, 16479 - 16427
Alignment:
Q  474 tttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| ||||||||    
T  16479 tttctctctatttcaatctaaataagtga-ttttcacatagatttaggtttttt 16427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 3725101 - 3725169
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||| ||| |||||||||  |||||||    
T  3725101 tctttttctctctatttcaatataaataagtga-ttttcacatagatcttgattttttctttgtgatttc 3725169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Original strand, 4192759 - 4192827
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||| |  |||||||||||||||||| |||||||||| |||| |||||||||||  |||||||    
T  4192759 tctttttctctatatttcaatctaaataagtga-ttttcacatatatttaggttttttctttgtgatttc 4192827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 6173552 - 6173608
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | ||||||||    
T  6173552 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctaggtttttt 6173608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 20047243 - 20047187
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  |||||||||||||||||| |||| |||||||||| ||||||||    
T  20047243 tctttttctctctttttcaatctaaataagtgactttt-acatagatttaggtttttt 20047187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 26025570 - 26025502
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||||||||||||||  ||||||||||||| | |||||||||||  |||||||    
T  26025570 tctttttctctctatttcaatctaaataagtg-gttttcacatagatctaggttttttctttgtgatttc 26025502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 31581880 - 31581812
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    |||||||||||||  |||||||||||||||||| ||||||||||||| | | |||||||||  |||||||    
T  31581880 tctttttctctctatttcaatctaaataagtga-ttttcacatagatctagtttttttctttttgatttc 31581812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 528
Target Start/End: Complemental strand, 7015871 - 7015814
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttc 528  Q
    ||||||||||| |  |||||||||||||| ||||||| ||||||||||| |||||||||    
T  7015871 tctttttctctttatttcaatctaaataattgatttt-cacatagatttaggttttttc 7015814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 539
Target Start/End: Original strand, 22421659 - 22421724
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||  ||||||||||||||||||  |||||||||||| | |||||||||||  |||||||    
T  22421659 ttttctctctatttcaatctaaataagtga-ctttcacatagatctaggttttttctttgtgatttc 22421724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 516
Target Start/End: Original strand, 34598908 - 34598953
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagat 516  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||    
T  34598908 tctttttctctctatttcaatctaaataagtga-ttttcacatagat 34598953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 469 - 539
Target Start/End: Complemental strand, 40626189 - 40626120
Alignment:
Q  469 gtctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||||||  ||||||||||||||| || ||||||||||||| |  ||||||||||  |||||||    
T  40626189 gtctttttctctctatttcaatctaaataaggga-ttttcacatagatctacgttttttctttgtgatttc 40626120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 527
Target Start/End: Complemental strand, 41712923 - 41712870
Alignment:
Q  473 ttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||  || ||||||||||||||| ||||||||||||||| ||||||||    
T  41712923 ttttctctctattttaatctaaataagtga-ttttcacatagatttaggtttttt 41712870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 472 - 540
Target Start/End: Original strand, 17319246 - 17319312
Alignment:
Q  472 tttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttcg 540  Q
    ||||||| |||  |||||||||||||| |   ||||||||||||| | |||||||||||||||||||||    
T  17319246 tttttctatctatttcaatctaaataacta--ttttcacatagatctaggttttttcttcatgatttcg 17319312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 27249312 - 27249256
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  27249312 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 27249256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Original strand, 30420597 - 30420653
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | ||||||||    
T  30420597 tctttttctctttatttcaatctaaataagtga-ttttcacatagatctaggtttttt 30420653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 527
Target Start/End: Complemental strand, 32680743 - 32680687
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggtttttt 527  Q
    |||||||||||||  ||||||||||||||||||  |||||||||||| | ||||||||    
T  32680743 tctttttctctctatttcaatctaaataagtga-ctttcacatagatctaggtttttt 32680687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 472 - 516
Target Start/End: Original strand, 18694970 - 18695013
Alignment:
Q  472 tttttctctctcgttcaatctaaataagtgatttttcacatagat 516  Q
    |||||||||||  ||||||||||||||||||||||| ||||||||    
T  18694970 tttttctctctatttcaatctaaataagtgattttt-acatagat 18695013  T

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Target: scaffold0014 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 539
Target Start/End: Complemental strand, 201532 - 201464
Alignment:
Q  470 tctttttctctctcgttcaatctaaataagtgatttttcacatagattttggttttttcttcatgatttc 539  Q
    ||||||||||| |  |||||||||||||||||| ||||||||||||| | | |||||||||  |||||||    
T  201532 tctttttctctatatttcaatctaaataagtga-ttttcacatagatctagattttttctttgtgatttc 201464  T

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