View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1128_low_31 (Length: 300)
Name: NF1128_low_31
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_31 |
 | |
|
| [»] scaffold0054 (1 HSPs) |
| | |
|
| [»] scaffold0237 (1 HSPs) |
| | |
|
| [»] scaffold1840 (1 HSPs) |
| | |
|
| [»] scaffold0572 (1 HSPs) |
| | |
|
| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 27 - 208
Target Start/End: Complemental strand, 24219890 - 24219709
Alignment:
| Q |
27 |
caaaggctgccttagaaatgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataa |
126 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24219890 |
caaaagctgccttagaaatgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataa |
24219791 |
T |
|
| Q |
127 |
acttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcacttataatacttta |
208 |
Q |
| |
|
||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24219790 |
acttgttaacgatgcttttgatttctattctgaaatggttgctaagagaatttgtcctactgttgtcacttataatacttta |
24219709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 197
Target Start/End: Original strand, 16350448 - 16350564
Alignment:
| Q |
81 |
atgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttg |
180 |
Q |
| |
|
||||||| ||||| | ||| || ||||||||| |||| ||||||||||| || | | |||| | || |||||||| |||||| ||| ||||||||| |
|
|
| T |
16350448 |
atgtggtaatgtatagcacaatcattgatggtttgtgtaaagataaactagtaactgatgcctatggtttatattcagaaatgattgtaaagagaattcc |
16350547 |
T |
|
| Q |
181 |
tcctactgttgtcactt |
197 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
16350548 |
tcccactgttgtcactt |
16350564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 35)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 24887158 - 24887005
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
||||||||||| ||||||| |||||||||| || | ||||| | ||||||| ||| |||||||||||| ||||||||| ||||||||||||| ||||||| |
|
|
| T |
24887158 |
tgctgagacgagttgatggcaaattggttcaacctaatgtgataatgtacagcaccattattgatggtatgtgcaaaggtaaacttgttaatgatgcttt |
24887059 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcactta |
198 |
Q |
| |
|
||||||||||| ||||||||| || |||||||||| |||| |||| ||||||| |
|
|
| T |
24887058 |
tgatttatattctgaaatggtcgcgaagagaatttctcctgatgttatcactta |
24887005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 51 - 200
Target Start/End: Original strand, 29928641 - 29928790
Alignment:
| Q |
51 |
gacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgattt |
150 |
Q |
| |
|
||||| ||||||| ||||| |||| | ||||||||| |||||||| || ||||| |||||| |||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
29928641 |
gacgatttgatggaaaatttgttcagcctgatgtggtaatgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttttgattt |
29928740 |
T |
|
| Q |
151 |
atattatgaaatggttgctaagagaatttgtcctactgttgtcacttata |
200 |
Q |
| |
|
||||| |||||||||||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
29928741 |
atattctgaaatggttgcaaagagaatttctcctaatgttgtcacttata |
29928790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 47 - 200
Target Start/End: Original strand, 29902620 - 29902773
Alignment:
| Q |
47 |
ctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttg |
146 |
Q |
| |
|
|||||||| ||||| |||||||||||| | | ||||||| ||||| || ||||||||||||||| ||||||||| |||| |||||||| ||||||||| |
|
|
| T |
29902620 |
ctgagacgtgttgatcggaaattggttcagcctaatgtggtaatgtataatacgattattgatggtatgtgcaaaggtaaatttgttaatgatgcttttg |
29902719 |
T |
|
| Q |
147 |
atttatattatgaaatggttgctaagagaatttgtcctactgttgtcacttata |
200 |
Q |
| |
|
||||||||| |||||||||| ||| ||||| || ||||| |||||||||||||| |
|
|
| T |
29902720 |
atttatattttgaaatggtttctaggagaacttctcctaatgttgtcacttata |
29902773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 200
Target Start/End: Original strand, 24711515 - 24711655
Alignment:
| Q |
60 |
atgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatga |
159 |
Q |
| |
|
||||||||||||||| || | ||||||| ||||||| ||| ||||||||| || | |||||| |||||||||||||| |||| ||||||||||||| ||| |
|
|
| T |
24711515 |
atgggaaattggttcaacctaatgtggtaatgtacaccacaattattgatagtttatgcaaatataaacttgttaatgatgcatttgatttatattctga |
24711614 |
T |
|
| Q |
160 |
aatggttgctaagagaatttgtcctactgttgtcacttata |
200 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||||||||| |
|
|
| T |
24711615 |
aatggctgctaagagaatttgccctgatgttgtcacttata |
24711655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 28927619 - 28927492
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
||||||||||| |||||||||||||||||| || ||||||||| ||||||| | |||||||||| || |||| |||||||||||||||||| | ||||| |
|
|
| T |
28927619 |
tgctgagacgagttgatgggaaattggttcaacctgatgtggtaatgtacactatgattattgatagtatgtgtaaagataaacttgttaatgaagcttt |
28927520 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaag |
172 |
Q |
| |
|
||||||||||| |||||||||| ||||| |
|
|
| T |
28927519 |
tgatttatattctgaaatggtttctaag |
28927492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 24272584 - 24272421
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
||||||||||| ||||||| |||||| ||| || | | |||| ||||||||||| ||||||||| | |||||||||||||||||| |||| ||||||| |
|
|
| T |
24272584 |
tgctgagacgagttgatggtaaattgcttcaacctaacttggtaatgtacaacaccattattgatagcatgtgcaaagataaacttgataatgatgcttt |
24272485 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcacttataatacttta |
208 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| ||| |||| |||||||||| ||||| |
|
|
| T |
24272484 |
tgatttatattctgaaatggtttctaagagaattttccctgatgttaacacttataatgcttta |
24272421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 24890883 - 24890720
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
|||||| |||| ||||||||||||| |||| | | ||| ||| |||||||||| |||||||||| | ||||||||| ||| ||||||||| ||||||| |
|
|
| T |
24890883 |
tgctgaaacgagttgatgggaaattagttcagcctaatgcggtaatgtacaacatgattattgataatatgtgcaaagctaagcttgttaatgatgcttt |
24890784 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcacttataatacttta |
208 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||| ||| |||| ||||||| ||| ||||| |
|
|
| T |
24890783 |
tgatttatattctcaaatggttgctaagagaatttgccctgatgttttcacttacaatgcttta |
24890720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 29349235 - 29349108
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
||||||||||| ||||||| |||||||||| || | ||||||| ||||||||||| ||||||||| | ||||||||| ||||||||||||| | ||||| |
|
|
| T |
29349235 |
tgctgagacgagttgatggtaaattggttcaacctaatgtggtaatgtacaacaccattattgatagcatgtgcaaagttaaacttgttaatgaagcttt |
29349136 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaag |
172 |
Q |
| |
|
||||||||||| |||||||||| ||||| |
|
|
| T |
29349135 |
tgatttatattctgaaatggtttctaag |
29349108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 29881809 - 29881952
Alignment:
| Q |
57 |
ttgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatatta |
156 |
Q |
| |
|
||||||| |||||||||| ||||||| ||| ||||||| ||||||||||| | |||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
29881809 |
ttgatggaaaattggttcagcttgatgcggtaatgtacagttcgattattgatagcatgtgtaaagataaacatgttaatgatgcttttgatttatattc |
29881908 |
T |
|
| Q |
157 |
tgaaatggttgctaagagaatttgtcctactgttgtcacttata |
200 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
29881909 |
tgaaatggctgcaaagagaatttctcctaatgttgtcacttata |
29881952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 29908965 - 29909108
Alignment:
| Q |
57 |
ttgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatatta |
156 |
Q |
| |
|
||||||| |||||||||| ||||||| ||| ||||||| ||||||||||| | |||| |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
29908965 |
ttgatggaaaattggttcagcttgatgcggtaatgtacagttcgattattgatagcatgtgtaaagataaacatgttaatgatgcttttgatttatattc |
29909064 |
T |
|
| Q |
157 |
tgaaatggttgctaagagaatttgtcctactgttgtcacttata |
200 |
Q |
| |
|
|||||||| ||| |||||||||| ||||| |||||||||||||| |
|
|
| T |
29909065 |
tgaaatggctgcaaagagaatttctcctaatgttgtcacttata |
29909108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 51 - 200
Target Start/End: Complemental strand, 24264383 - 24264234
Alignment:
| Q |
51 |
gacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgattt |
150 |
Q |
| |
|
||||| ||||||| |||||||||| ||||||||||| ||||||| |||||||||||| || |||| ||||||||| ||||||| ||||||||||||| |
|
|
| T |
24264383 |
gacgagttgatggaaaattggttcagcttgatgtggtaatgtacagtacgattattgatagtatgtgtaaagataaaaatgttaatgatgcttttgattt |
24264284 |
T |
|
| Q |
151 |
atattatgaaatggttgctaagagaatttgtcctactgttgtcacttata |
200 |
Q |
| |
|
||||| |||||||||| ||| |||||||| | | | | |||||||||||| |
|
|
| T |
24264283 |
atattctgaaatggtttctaggagaatttcttccaatattgtcacttata |
24264234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 29073125 - 29073278
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
||||||||||| | ||||| |||||||||| || | ||||||| ||||||||||| ||||||||| | ||||||||| ||||||||||||| | ||||| |
|
|
| T |
29073125 |
tgctgagacgagtcgatggtaaattggttcaacctaatgtggtaatgtacaacaccattattgatagcatgtgcaaagttaaacttgttaatgaagcttt |
29073224 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcactta |
198 |
Q |
| |
|
||||||||||| |||||||||| || || |||||| |||| |||||| ||||| |
|
|
| T |
29073225 |
tgatttatattctgaaatggtttctgagggaatttctcctgatgttgttactta |
29073278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 29105698 - 29105851
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
||||||||||| | ||||| |||||||||| || | ||||||| ||||||||||| ||||||||| | ||||||||| ||||||||||||| | ||||| |
|
|
| T |
29105698 |
tgctgagacgagtcgatggtaaattggttcaacctaatgtggtaatgtacaacaccattattgatagcatgtgcaaagttaaacttgttaatgaagcttt |
29105797 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcactta |
198 |
Q |
| |
|
||||||||||| |||||||||| || || |||||| |||| |||||| ||||| |
|
|
| T |
29105798 |
tgatttatattctgaaatggtttctgagggaatttctcctgatgttgttactta |
29105851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 29886665 - 29886793
Alignment:
| Q |
51 |
gacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgattt |
150 |
Q |
| |
|
||||| ||||||| |||||||||| | ||||||||| |||||||| || ||||| |||||| |||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
29886665 |
gacgagttgatggaaaattggttcagcctgatgtggtaatgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttttgattt |
29886764 |
T |
|
| Q |
151 |
atattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
||||| |||||||| | |||||||||||| |
|
|
| T |
29886765 |
atattctgaaatggcttctaagagaattt |
29886793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 29897450 - 29897578
Alignment:
| Q |
51 |
gacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgattt |
150 |
Q |
| |
|
||||| ||||||| |||||||||| ||| ||| ||| |||||||| || ||||||||||| |||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
29897450 |
gacgagttgatggtaaattggttcagcttaatgcggtaatgtacaataccgttattgatggtatgtgtaaagataaacatgttaatgatgcttttgattt |
29897549 |
T |
|
| Q |
151 |
atattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
||||| |||||||||||| |||||||||| |
|
|
| T |
29897550 |
atattctgaaatggttgcaaagagaattt |
29897578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 45 - 184
Target Start/End: Original strand, 24730217 - 24730356
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
|||||| |||| ||||||||||||| |||| | | ||| ||| |||||||||| |||||||||| | ||||||||| ||| ||||||||| ||||||| |
|
|
| T |
24730217 |
tgctgaaacgagttgatgggaaattagttcagcctaatgcggtaatgtacaacatgattattgataatatgtgcaaagctaagcttgttaatgatgcttt |
24730316 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaatttgtcct |
184 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| |||| |
|
|
| T |
24730317 |
tgatttatattctcaaatggttgctaagagaatttctcct |
24730356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 45 - 172
Target Start/End: Complemental strand, 29367058 - 29366931
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
||||||||||| ||||||| |||||||||| || | ||||||| ||||||||||| ||||||||| | ||||||||| ||| ||||||||| | ||||| |
|
|
| T |
29367058 |
tgctgagacgagttgatggtaaattggttcaacctaatgtggtaatgtacaacaccattattgatagcatgtgcaaagttaagcttgttaatgaagcttt |
29366959 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaag |
172 |
Q |
| |
|
||||||||||| |||||||||| ||||| |
|
|
| T |
29366958 |
tgatttatattctgaaatggtttctaag |
29366931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 29834577 - 29834711
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
|||||||||| | |||||||||||||||| | | |||||| |||||||| || ||||| |||||| |||| |||||||||| ||||||| ||||||| |
|
|
| T |
29834577 |
tgctgagacgtgtagatgggaaattggttcagcctagtgtggtaatgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttt |
29834676 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| |
|
|
| T |
29834677 |
tgatttatattctgaaatggtttctaagagaattt |
29834711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 179
Target Start/End: Original strand, 29866011 - 29866145
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
|||||||||| | |||||||||||||||| | | |||||| |||||||| || ||||| |||||| |||| |||||||||| ||||||| ||||||| |
|
|
| T |
29866011 |
tgctgagacgtgtagatgggaaattggttcagcctagtgtggtaatgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttt |
29866110 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||| |
|
|
| T |
29866111 |
tgatttatattctgaaatggtttctaagagaattt |
29866145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 45 - 198
Target Start/End: Complemental strand, 29211715 - 29211562
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
|||| |||||| ||||||| |||||||||| | | ||||||| ||||||| || ||||| |||||| |||| |||||||||| ||||||| ||||||| |
|
|
| T |
29211715 |
tgctcagacgagttgatggtaaattggttcagcctaatgtggtaatgtacagtaccattatcgatggtatgtgtaaagataaacatgttaatgatgcttt |
29211616 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcactta |
198 |
Q |
| |
|
||||||||||| |||||||||| ||||| |||||| ||| | |||||| ||||| |
|
|
| T |
29211615 |
tgatttatattctgaaatggtttctaagggaatttctcccaatgttgttactta |
29211562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 179
Target Start/End: Original strand, 29945997 - 29946128
Alignment:
| Q |
48 |
tgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttga |
147 |
Q |
| |
|
||||||| ||||| | |||||||||| || ||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||| ||| | |||| |
|
|
| T |
29945997 |
tgagacgtgttgatagaaaattggttcaacctgatgtggtaatgtatagtgtgattattgatggtatgtgcaaagataaacttgttaatgatgttgttga |
29946096 |
T |
|
| Q |
148 |
tttatattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| |
|
|
| T |
29946097 |
tttatattctgaaatggttactaagagaattt |
29946128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 52 - 198
Target Start/End: Original strand, 29084387 - 29084533
Alignment:
| Q |
52 |
acgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgattta |
151 |
Q |
| |
|
|||| ||||||| |||||||||| ||| ||| ||| |||||||| || ||||| ||||| |||| |||||||||| ||||||| |||||||||||||| |
|
|
| T |
29084387 |
acgagttgatggtaaattggttcagcttaatgcggtaatgtacaataccgttatttatggtatgtgtaaagataaacatgttaatgatgcttttgattta |
29084486 |
T |
|
| Q |
152 |
tattatgaaatggttgctaagagaatttgtcctactgttgtcactta |
198 |
Q |
| |
|
|||| |||||||||| ||||| |||||| ||| | |||||| ||||| |
|
|
| T |
29084487 |
tattctgaaatggtttctaagggaatttctcccaatgttgttactta |
29084533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 198
Target Start/End: Original strand, 29893915 - 29894068
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
|||| |||||| ||||||| || ||||||| | | ||||||| ||||||| || ||||| |||||| |||| |||||||||| ||||||| ||||||| |
|
|
| T |
29893915 |
tgctcagacgagttgatggtaatttggttcagcctaatgtggtaatgtacagtaccattatcgatggtatgtgtaaagataaacatgttaatgatgcttt |
29894014 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcactta |
198 |
Q |
| |
|
||||||||||| |||||||||| ||||| |||||| ||| | |||||| ||||| |
|
|
| T |
29894015 |
tgatttatattctgaaatggtttctaagggaatttctcccaatgttgttactta |
29894068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 25450282 - 25450430
Alignment:
| Q |
57 |
ttgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatatta |
156 |
Q |
| |
|
||||||| |||||||||| | | |||| || ||||||||| | |||||||| | |||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25450282 |
ttgatggtaaattggttcagcctcatgtagtaatgtacaacgtgcttattgatagaatgtgtaaagataaacttgttaacgttgcttttgatttatatta |
25450381 |
T |
|
| Q |
157 |
tgaaatggttgctaagagaatttgtcctactgttgtcacttataatact |
205 |
Q |
| |
|
||||||| |||||||||| |||| ||||| |||| ||||||| |||||| |
|
|
| T |
25450382 |
tgaaatgcttgctaagaggatttctcctaatgttatcacttacaatact |
25450430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 29905021 - 29905149
Alignment:
| Q |
51 |
gacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgattt |
150 |
Q |
| |
|
||||| ||||||| ||| |||||| || ||||||||| | ||||| ||||||||||| || |||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
29905021 |
gacgagttgatggaaaactggttcaacctgatgtggtaaagtacattgcgattattgatagtatgtgtaaagataaacatgttaatcatgcttttgattt |
29905120 |
T |
|
| Q |
151 |
atattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
||||| | |||||||| |||||||||||| |
|
|
| T |
29905121 |
atattctaaaatggtttctaagagaattt |
29905149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 31000531 - 31000442
Alignment:
| Q |
89 |
atgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatt |
178 |
Q |
| |
|
||||||| ||| ||||||||| || | |||||| |||||||||| || |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31000531 |
atgtacaccacaattattgatagtttatgcaaatataaacttgtcaacgatgcttttgatttatattctgaaatggttgctaagagaatt |
31000442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 52 - 172
Target Start/End: Original strand, 29098712 - 29098832
Alignment:
| Q |
52 |
acgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgattta |
151 |
Q |
| |
|
|||| ||||||| || ||||||| | | ||||||| ||||||||||| ||||||||| | ||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
29098712 |
acgagttgatggtaatttggttcagcctaatgtggtaatgtacaacaccattattgatagcatgtgcaaagttaaacttgttaatgaagcttttgattta |
29098811 |
T |
|
| Q |
152 |
tattatgaaatggttgctaag |
172 |
Q |
| |
|
| || |||||||||| ||||| |
|
|
| T |
29098812 |
ttttctgaaatggtttctaag |
29098832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 172
Target Start/End: Original strand, 29115630 - 29115750
Alignment:
| Q |
52 |
acgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgattta |
151 |
Q |
| |
|
|||| ||||||| || ||||||| | | ||||||| ||||||||||| ||||||||| | ||||||||| ||||||||||||| | |||||||||||| |
|
|
| T |
29115630 |
acgagttgatggtaatttggttcagcctaatgtggtaatgtacaacaccattattgatagcatgtgcaaagttaaacttgttaatgaagcttttgattta |
29115729 |
T |
|
| Q |
152 |
tattatgaaatggttgctaag |
172 |
Q |
| |
|
| || ||||||| || ||||| |
|
|
| T |
29115730 |
ttttctgaaatgatttctaag |
29115750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 21161226 - 21161099
Alignment:
| Q |
81 |
atgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttg |
180 |
Q |
| |
|
||||||| ||||||| || |||||| || || | ||||| ||||||||||| | | |||||||||||||||||| |||||||||||| | |||||| | |
|
|
| T |
21161226 |
atgtggtcatgtacagtacaattatttatagtttatgcaaggataaacttgtaattgatgcttttgatttatattctgaaatggttgccatgagaatatt |
21161127 |
T |
|
| Q |
181 |
tcctactgttgtcacttataatacttta |
208 |
Q |
| |
|
||||| ||| || || |||||||||||| |
|
|
| T |
21161126 |
tcctaatgtggttacctataatacttta |
21161099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 24934073 - 24934189
Alignment:
| Q |
89 |
atgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttgtcctactg |
188 |
Q |
| |
|
|||||||| || ||||||||| || ||||||| ||||||||||| | | |||| | |||||||| || ||||||| ||| ||||||||||| ||| || |
|
|
| T |
24934073 |
atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatg |
24934172 |
T |
|
| Q |
189 |
ttgtcacttataatact |
205 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
24934173 |
ttgtcacttatactact |
24934189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 89 - 205
Target Start/End: Original strand, 24941606 - 24941722
Alignment:
| Q |
89 |
atgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttgtcctactg |
188 |
Q |
| |
|
|||||||| || ||||||||| || ||||||| ||||||||||| | | |||| | |||||||| || ||||||| ||| ||||||||||| ||| || |
|
|
| T |
24941606 |
atgtacaatacaattattgatagtttgtgcaaggataaacttgtaattcatgcctctgatttatgttctgaaatgattgttaagagaatttttccagatg |
24941705 |
T |
|
| Q |
189 |
ttgtcacttataatact |
205 |
Q |
| |
|
|||||||||||| |||| |
|
|
| T |
24941706 |
ttgtcacttatactact |
24941722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 29876221 - 29876317
Alignment:
| Q |
79 |
tgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagaga |
175 |
Q |
| |
|
||||||||| ||||| | | |||||||| ||||| |||| |||||||| |||||| || |||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
29876221 |
tgatgtggtaatgtataccgcgattattaatggtttgtgtaaagataagcttgttgatgatgcgtttgatttgtatactgaaatggttgctaagaga |
29876317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 208
Target Start/End: Complemental strand, 24739796 - 24739669
Alignment:
| Q |
81 |
atgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttg |
180 |
Q |
| |
|
||||||| ||||||| || |||||| || || | ||||| ||||||||||| | | |||||||||||||||||| | ||||| || |||||||||| |
|
|
| T |
24739796 |
atgtggtcatgtacagtacaattatttatagtttatgcaaggataaacttgtaattgatgcttttgatttatattctcaaatgcttctcaagagaatttc |
24739697 |
T |
|
| Q |
181 |
tcctactgttgtcacttataatacttta |
208 |
Q |
| |
|
|||| ||| ||||||| ||||||||| |
|
|
| T |
24739696 |
tcctgatgtcatcacttacaatacttta |
24739669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 24726258 - 24726324
Alignment:
| Q |
114 |
tgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttg |
180 |
Q |
| |
|
||||||||||||||||| | | | | | ||||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
24726258 |
tgtgcaaagataaacttctaattgaaacatttgatttatattatgaaatggttgataagagcatttg |
24726324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 205
Target Start/End: Complemental strand, 30578331 - 30578245
Alignment:
| Q |
119 |
aaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcacttataatact |
205 |
Q |
| |
|
|||||||||||||| | |||| | ||||||||||| ||| ||||||| |||||||||| |||| ||||||||| ||||||||| |
|
|
| T |
30578331 |
aaagataaacttgtagttgatgcgtatgatttatattgtgagatggttgtcaagagaatttttcctgatgttgtcacgtataatact |
30578245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 32 - 208
Target Start/End: Original strand, 10129486 - 10129662
Alignment:
| Q |
32 |
gctgccttagaaatgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttg |
131 |
Q |
| |
|
|||||| | ||| ||||||||||| ||||||||||| | |||| | | ||||||| ||||| | || ||| ||||||||| |||||||||||||||||| |
|
|
| T |
10129486 |
gctgccctggaattgctgagacgagttgatgggaaaattgttcagcctaatgtggtaatgtataccatgatcattgatggtatgtgcaaagataaacttg |
10129585 |
T |
|
| Q |
132 |
ttaattatgcttttgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcacttataatacttta |
208 |
Q |
| |
|
||||| |||||||| ||||||||| ||||||| | ||||||||||||| |||| ||||||||||||||||| |||| |
|
|
| T |
10129586 |
ttaatgatgcttttaatttatattctgaaatgatcgctaagagaatttttcctgatgttgtcacttataataattta |
10129662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 4260920 - 4260799
Alignment:
| Q |
79 |
tgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatt |
178 |
Q |
| |
|
||||||||| ||||||| ||| ||||||| | |||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4260920 |
tgatgtggtaatgtacactacggttattgacaatatgtgcaaagatacatttgttaatgatgcttttgatttatattatgaaatggttgctagcggaatt |
4260821 |
T |
|
| Q |
179 |
tgtcctactgttgtcacttata |
200 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
4260820 |
tctcctaatgttgtcacttata |
4260799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 4264542 - 4264421
Alignment:
| Q |
79 |
tgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatt |
178 |
Q |
| |
|
||||||||| ||||||| ||| ||||||| | |||||||||||| | |||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4264542 |
tgatgtggtaatgtacactacggttattgacaatatgtgcaaagatacatttgttaatgatgcttttgatttatattatgaaatggttgctagcggaatt |
4264443 |
T |
|
| Q |
179 |
tgtcctactgttgtcacttata |
200 |
Q |
| |
|
| ||||| |||||||||||||| |
|
|
| T |
4264442 |
tctcctaatgttgtcacttata |
4264421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 17250710 - 17250828
Alignment:
| Q |
80 |
gatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
||||| || ||||| || || |||||||||||| | || |||||||||||||| | |||| ||||||||||||| ||||||| ||| ||||| ||| |
|
|
| T |
17250710 |
gatgttgtaatgtataatactattattgatggtttatgtaaagataaacttgtgagggatgcgtttgatttatattgtgaaatgtttgagaagagggttt |
17250809 |
T |
|
| Q |
180 |
gtcctactgttgtcactta |
198 |
Q |
| |
|
||||| |||||| ||||| |
|
|
| T |
17250810 |
ttcctaatgttgttactta |
17250828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 19489686 - 19489730
Alignment:
| Q |
119 |
aaagataaacttgttaattatgcttttgatttatattatgaaatg |
163 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
19489686 |
aaagataaacatgtaaatgatgcttttgatttatattctgaaatg |
19489730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 200
Target Start/End: Complemental strand, 15063510 - 15063358
Alignment:
| Q |
48 |
tgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttga |
147 |
Q |
| |
|
||||||| ||||||| ||||||||||| | | ||||||| ||||| | ||||||||||||| || |||| || |||||||||||||| |||||||||| |
|
|
| T |
15063510 |
tgagacgggttgatggaaaattggttcggcctaatgtggtaatgtatagcacgattattgatagtatgtgtaaggataaacttgttaacgatgcttttga |
15063411 |
T |
|
| Q |
148 |
tttatattatgaaatggttgctaagagaatttgtcctactgttgtcacttata |
200 |
Q |
| |
|
|||||||| |||||||||| |||| ||||||| |||| ||| |||||||||| |
|
|
| T |
15063410 |
tttatattgtgaaatggtttctaaaagaatttctcctgatgtagtcacttata |
15063358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 54338 - 54204
Alignment:
| Q |
45 |
tgctgagacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttt |
144 |
Q |
| |
|
|||||||||| ||||||| |||||||||| ||| ||| ||| |||||||| || ||||||||||| ||| |||||||||| ||||||| ||||||| |
|
|
| T |
54338 |
tgctgagacgtgttgatggaaaattggttcagcttaatgcggtaatgtacaataccgttattgatggtatgtataaagataaacatgttaatgatgcttt |
54239 |
T |
|
| Q |
145 |
tgatttatattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| |
|
|
| T |
54238 |
tgatttatattctgaaatggttgcaaagagaattt |
54204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 51 - 179
Target Start/End: Original strand, 21711 - 21839
Alignment:
| Q |
51 |
gacgaattgatgggaaattggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgattt |
150 |
Q |
| |
|
|||||| |||||| ||||| |||| | ||||||||| |||||||| || ||||| |||||| |||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
21711 |
gacgaaatgatggaaaattagttcagcctgatgtggtaatgtacaataccattatcgatggtatgtgtaaagataaacatgttaatgatgcttttgattt |
21810 |
T |
|
| Q |
151 |
atattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
||||| ||||| |||| |||||||||||| |
|
|
| T |
21811 |
atattctgaaaaggtttctaagagaattt |
21839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1840 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold1840
Description:
Target: scaffold1840; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 830 - 922
Alignment:
| Q |
104 |
attgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcact |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| |||| | ||| ||||||| ||||||| || | |||||||||| |||||||||||||||| |
|
|
| T |
830 |
attgatggtttgtgcaaagataaacttgtaaatgatgcatatgagttatattctgaaatgattacaaagagaatttctcctactgttgtcact |
922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 104 - 196
Target Start/End: Original strand, 2652 - 2744
Alignment:
| Q |
104 |
attgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttgtcctactgttgtcact |
196 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||| |||| | ||| ||||||| ||||||| || | |||||||||| |||||||||||||||| |
|
|
| T |
2652 |
attgatggtttgtgcaaagataaacttgtaaatgatgcatatgagttatattctgaaatgattacaaagagaatttctcctactgttgtcact |
2744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 197
Target Start/End: Original strand, 136771 - 136888
Alignment:
| Q |
80 |
gatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaattt |
179 |
Q |
| |
|
|||||||| ||||| | || ||||||||| || |||| |||||||||||||| | | |||||| ||| ||||||| ||||||| |||| |||| ||||| |
|
|
| T |
136771 |
gatgtggtaatgtatagcataattattgatagtttgtgtaaagataaacttgtaattgatgcttatgagttatattctgaaatgattgcaaagacaattt |
136870 |
T |
|
| Q |
180 |
gtcctactgttgtcactt |
197 |
Q |
| |
|
|||| ||||||||||| |
|
|
| T |
136871 |
ctcctgatgttgtcactt |
136888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 197
Target Start/End: Complemental strand, 105339 - 105223
Alignment:
| Q |
81 |
atgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttgctaagagaatttg |
180 |
Q |
| |
|
||||||| ||||| ||||| | |||||| || ||||||||||||||||||| | | |||| | ||| ||||| | ||||||| || | |||| ||||| |
|
|
| T |
105339 |
atgtggtaatgtataacacagtcattgatagtttgtgcaaagataaacttgtaagtgatgcatatgagttatactctgaaatgattacaaagaaaatttc |
105240 |
T |
|
| Q |
181 |
tcctactgttgtcactt |
197 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
105239 |
tcctactgttgtcactt |
105223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 205
Target Start/End: Complemental strand, 44263207 - 44263070
Alignment:
| Q |
68 |
ttggttcgacttgatgtggtgatgtacaacacgattattgatggtgtgtgcaaagataaacttgttaattatgcttttgatttatattatgaaatggttg |
167 |
Q |
| |
|
|||||||| | | ||||||| |||||||| || |||||| || || |||||||| |||||||| | | | |||| | || ||||| || ||||||| ||| |
|
|
| T |
44263207 |
ttggttcggcctaatgtggtcatgtacaatacaattattcatagtttgtgcaaaaataaacttataattgatgcctctgctttatgttctgaaatgattg |
44263108 |
T |
|
| Q |
168 |
ctaagagaatttgtcctactgttgtcacttataatact |
205 |
Q |
| |
|
|||||||||| ||| |||||||||||||| |||| |
|
|
| T |
44263107 |
tcaagagaatttttccggatgttgtcacttatactact |
44263070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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