View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1128_low_32 (Length: 289)

Name: NF1128_low_32
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1128_low_32
NF1128_low_32
[»] chr7 (1 HSPs)
chr7 (83-166)||(30645117-30645200)


Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 30645117 - 30645200
Alignment:
83 caccacagacatgaatcagaatgatcttccaaaatatcagcatcagcattgggaactccgtacatcatcctttgcccaacaaac 166  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
30645117 caccaaagacatgaatcagaatgatcttccaaaatatcagcatcagcattgggaactccgtacatcatcctttgcccaacaaac 30645200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University