View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_34 (Length: 252)
Name: NF1128_low_34
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 223
Target Start/End: Complemental strand, 54095320 - 54095100
Alignment:
| Q |
3 |
tgatccagatgtatcaatgaaatatcttgaaaaagattaagtgttcattagaacgatggatatttatgcttcaagaatctttgtgtgttcaatcttgcct |
102 |
Q |
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| T |
54095320 |
tgatccagatgtatcattgaaatatcttgagaaagattaagtgttcattaaaacgatggatatttacgcttcaagaatctttgtgtgttcaaccttacct |
54095221 |
T |
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| Q |
103 |
tcgaaaacaaacttcaaaactgacgcccaatccatataatttaatcattaaattgttcaaggctacttttcgtaaagtgactttcttgatccaaaccttg |
202 |
Q |
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| T |
54095220 |
tggaaaacaaacttaaaaactgacgaccaatccatataatttaatcactaaattgttcaaggctactttccgcaaagtgactttcttgatccaaaccttg |
54095121 |
T |
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| Q |
203 |
atcataatccaagctagtatg |
223 |
Q |
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||||||||||||||||||||| |
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| T |
54095120 |
atcataatccaagctagtatg |
54095100 |
T |
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