View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1128_low_39 (Length: 240)

Name: NF1128_low_39
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1128_low_39
NF1128_low_39
[»] chr8 (2 HSPs)
chr8 (56-138)||(41821954-41822036)
chr8 (64-138)||(3732057-3732131)
[»] scaffold0576 (1 HSPs)
scaffold0576 (64-138)||(2499-2573)
[»] chr7 (1 HSPs)
chr7 (64-138)||(2753963-2754037)
[»] chr6 (1 HSPs)
chr6 (64-138)||(15357510-15357584)
[»] chr2 (1 HSPs)
chr2 (64-138)||(28656279-28656353)
[»] chr1 (1 HSPs)
chr1 (64-138)||(20262448-20262522)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 41821954 - 41822036
Alignment:
Q  56 aggcttacaaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41821954 aggcttacaaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 41822036  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 3732131 - 3732057
Alignment:
Q  64 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 138  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3732131 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaagagcatatgaaacttcagaaacatgaa 3732057  T

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Target: scaffold0576 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 2573 - 2499
Alignment:
Q  64 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 138  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2573 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaagagcatatgaaacttcagaaacatgaa 2499  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 138
Target Start/End: Original strand, 2753963 - 2754037
Alignment:
Q  64 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 138  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2753963 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaagagcatatgaaacttcagaaacatgaa 2754037  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 15357584 - 15357510
Alignment:
Q  64 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 138  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15357584 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaagagcatatgaaacttcagaaacatgaa 15357510  T

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Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 28656353 - 28656279
Alignment:
Q  64 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 138  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||    
T  28656353 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaaaagcatatgaaacttcacaaacatgaa 28656279  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 20262522 - 20262448
Alignment:
Q  64 aaacagaagaaagatgaggaggctgcaaatcttatgaaggaagaggaagaacatatgaaacttcagaaacatgaa 138  Q
    |||| ||| ||||| |||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||||    
T  20262522 aaactgaaaaaagacgaggaggctgaaaatcttatgaaggaagaggaaaagcatatgaaacttcacaaacatgaa 20262448  T

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