View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_4 (Length: 513)
Name: NF1128_low_4
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_4 |
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| [»] scaffold0430 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 28 - 405
Target Start/End: Original strand, 18423373 - 18423750
Alignment:
| Q |
28 |
tttcgatgatggctttggagcctactcgtcttttatcgctcaatttttggagtcttgcctagtgatcctctgatttaggactcttggggtttgtgtacgt |
127 |
Q |
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| T |
18423373 |
tttcgatgatggctttggagcctactcgtcttttatcgctcgttttttggagtcttgcctagtgatgctctgatttaggactgttagggtttgtgtacgt |
18423472 |
T |
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| Q |
128 |
atcagattatttgttgaaccttgagttcaatttgatgatgtatttttaagatatgatatctgactttatgttgtcgagttttattttccgctgcgacata |
227 |
Q |
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| T |
18423473 |
atcagattatttgttgaaccttgagttcaatttgacgatgtatttttaagatatgatatctgactttaagttgtcgagttttattttccgctgcgacata |
18423572 |
T |
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| Q |
228 |
atatttatatatgatgaattatgtttggattgaattgacaatgtgtagcatcttgaagtatttgattaattgttgcgtttttatttaaaaataatacgtg |
327 |
Q |
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| T |
18423573 |
atatttatatatgatgaattatgttttgattgaattgacgatgtgtaacatcttgaagtatttgattaattgttgcatttttatttaaaaataatacgtg |
18423672 |
T |
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| Q |
328 |
gggcttatggtgttagaataaggtggtctctattaaaagatatgcaaaacataatagatttatgataaattttcactc |
405 |
Q |
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| T |
18423673 |
gggcttatggtgttagaataaggtggtctctattaaataatatgtaaaacataatagatttatgataaactttcactc |
18423750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 28 - 265
Target Start/End: Original strand, 20739445 - 20739683
Alignment:
| Q |
28 |
tttcgatgatggctttggagcctactcgtcttttatcgctcaatttttggagtcttgcctagtgatcctctgatttaggactcttggggtttg---tgta |
124 |
Q |
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| T |
20739445 |
tttcgaagatggttttgaagcctactcgtcttttatctctcatttttgggaatctggtctaatgatgctattatttaggatggttggggtttaatttgta |
20739544 |
T |
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| Q |
125 |
cgtatcagattatttgttgaaccttgagttcaatttgatgatgtatttttaagatatgatatctgactttatgttgtcgagttttattttccgctgcgac |
224 |
Q |
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| T |
20739545 |
cttattagattatttgccgaaccttgagttcaatttgatgatgtatttttaagacatgttatatgagtttatgttgtcgagttttattttctactgcggc |
20739644 |
T |
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| Q |
225 |
ataatatttatatatgatgaattatgtttggattgaattga |
265 |
Q |
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| T |
20739645 |
gtaatatttatata--atgaagtatgtttggattgaattga |
20739683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0430 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0430
Description:
Target: scaffold0430; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 10248 - 10329
Alignment:
| Q |
143 |
gaaccttgagttcaatttgatgatgtatttttaagatatgatatctgactttatgttgtcgag-ttttattttccgctgcgac |
224 |
Q |
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| T |
10248 |
gaaccttgtgttcattttgatgatgta-tcttgagatatgatatttgactctatgttgtagagattttattttccgttgcgac |
10329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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