View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_5 (Length: 484)
Name: NF1128_low_5
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 30 - 484
Target Start/End: Complemental strand, 41813664 - 41813212
Alignment:
| Q |
30 |
aattcaccatattctatttcgattaatctgattataactagtatatttggacatcctgtgtnnnnnnnntgactattggtgcatacaaattaaactaaaa |
129 |
Q |
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| T |
41813664 |
aattcaccatattctatttcgattaatatgattataactagtatatttggacatcctgtgtaaaaaaaatgactattggtgcatacaaattaaactaaaa |
41813565 |
T |
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| Q |
130 |
aagtcaaaatgaaattaacattgatcaacttttataatagaattttcttttacaatagttattcaaacaaagcattttattaaaaaacaatgcacaaagc |
229 |
Q |
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| T |
41813564 |
--gtcaaaatgaaattaacattgatcaacttttataatagaattttcttatacaatagttattcaaacaaagcattttattaaaaaacaatgcacaaagc |
41813467 |
T |
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| Q |
230 |
atttaattaattttgttaactttacaagagatatacaatgtatacatgttactaaagagaatttgtggccactaatacataattttctctgatcacagtc |
329 |
Q |
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| T |
41813466 |
atttaattaattttgttaactttacaagagatatacaatgtatacatgttacttaagagtatttgtggccactaatacataattttctctaatcacagtc |
41813367 |
T |
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| Q |
330 |
acacagttctttatgtgaaaaccaataaacataacaatattaagaaacaattaagcaaaccatttcttacagccaaataagatctacaacatgctagatt |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41813366 |
acacagttctttatgtgaaaaccaataaacataacaatattaagaaacaattaaacaaaccatttcttacagccaaataagatctacaacatgctagatt |
41813267 |
T |
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| Q |
430 |
gttaagtatttggtcaatatctgagtacgctaatttggtgctggtttaaactttt |
484 |
Q |
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| T |
41813266 |
gttaagtatttggtcaatatctgagtacgctaatttggtgctggtttaaactttt |
41813212 |
T |
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