View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1128_low_8 (Length: 463)
Name: NF1128_low_8
Description: NF1128
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1128_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 29 - 454
Target Start/End: Original strand, 14181520 - 14181946
Alignment:
| Q |
29 |
aaattgtagttgtgattccgcttgagagacctctaaaccctttatattgcaaaacccaatttaaaaccatcgttttgatattatatacatatttt-tatt |
127 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| |||| |
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| T |
14181520 |
aaattgtagttgtgattccgcttgagagacctctaaaccctttatattgcaaaacgcaatttaaaaccatcgttttaatattatatacattttttttatt |
14181619 |
T |
|
| Q |
128 |
tatgctattggtgttgacattgacaccaatctcaatttttctgccacataagccattgcacaaatttgactacatgcctcttcgagaacatgaaccaaaa |
227 |
Q |
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| T |
14181620 |
tatgctattggtgttgacattgacaccaatctcaatttttctgccacataagccattgcatgaatttgactacatgcctctttaagaacatgaagcacaa |
14181719 |
T |
|
| Q |
228 |
tcaaaagaaatatgcctccaaaagcaacaactctaaacattactttttctgatggtgactttgcaatcaaataaacacaatccaaacttatcaaaatcca |
327 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14181720 |
tcaaaagaaatatgcatccaaaagcaacaactctcaacattactctttctggtggtgactttgcaatcaaataaacacaatccaaacttatcaaaatcca |
14181819 |
T |
|
| Q |
328 |
actaaacctttccatcaacactttaatcatggacacaaatttccccacattttctccaaagattttacatataatcctcaaacaaagaacactaacaaca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
14181820 |
actaaacctttccatcaacactttaatcatggacacaaatttccccacattttctccaaagattgtacatataatcctcaaacaaagaacactaccaaca |
14181919 |
T |
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| Q |
428 |
aaaaatgttgtcattgaccaacctttg |
454 |
Q |
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| T |
14181920 |
aaaaatgttgtcattgaccaacctttg |
14181946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 29 - 454
Target Start/End: Original strand, 14194681 - 14195105
Alignment:
| Q |
29 |
aaattgtagttgtgattccgcttg-agagacctctaaaccctttatattgcaaaacccaatttaaaaccatcgttttgatattatatacatatttttatt |
127 |
Q |
| |
|
|||||||||||||||||| | ||| ||||| ||| |||| |||||||||||||| | |||||||||||||||||||| |||||| || | |||||||| |
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| T |
14194681 |
aaattgtagttgtgattctgtttgcagagatctcaaaactctttatattgcaaaccgcaatttaaaaccatcgttttcatattacatg--tttttttatt |
14194778 |
T |
|
| Q |
128 |
tatgctattggtgttgacattgacaccaatctcaatttttctgccacataagccattgcacaaatttgactacatgcctcttcgagaacatgaaccaaaa |
227 |
Q |
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| T |
14194779 |
tatgctattggtgttgacattgacaccaatctcaatttttctaccacataagccattgcacaaatttgactacatgcctctttgagaacatgaagcaaaa |
14194878 |
T |
|
| Q |
228 |
tcaaaagaaatatgcctccaaaagcaacaactctaaacattactttttctgatggtgactttgcaatcaaataaacacaatccaaacttatcaaaatcca |
327 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14194879 |
tcaaaagaaatatgcctccaaaagcaacaactctcaacattactttttctggtggtgactttgcaatcaaataaacacaatccaaacttatcaaaatcca |
14194978 |
T |
|
| Q |
328 |
actaaacctttccatcaacactttaatcatggacacaaatttccccacattttctccaaagattttacatataatcctcaaacaaagaacactaacaaca |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14194979 |
actaaacctttccatcaacactttaatcatggacacaaatttccccacattttcaccaaagattttacatataatcctcaaacaaagaacactaacaaca |
14195078 |
T |
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| Q |
428 |
aaaaatgttgtcattgaccaacctttg |
454 |
Q |
| |
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|||||||||||||||||||| |||||| |
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|
| T |
14195079 |
aaaaatgttgtcattgaccagcctttg |
14195105 |
T |
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