View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11290_high_2 (Length: 232)

Name: NF11290_high_2
Description: NF11290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11290_high_2
NF11290_high_2
[»] chr3 (45 HSPs)
chr3 (1-229)||(17941648-17941876)
chr3 (93-231)||(17941524-17941662)
chr3 (93-214)||(19461318-19461439)
chr3 (93-214)||(18015880-18016001)
chr3 (73-208)||(19424382-19424517)
chr3 (74-215)||(14896482-14896623)
chr3 (93-214)||(18115751-18115872)
chr3 (93-214)||(19399494-19399615)
chr3 (79-193)||(18022574-18022688)
chr3 (93-214)||(19351180-19351301)
chr3 (93-214)||(19413970-19414091)
chr3 (73-229)||(17727759-17727914)
chr3 (73-229)||(19028988-19029143)
chr3 (93-214)||(19436816-19436937)
chr3 (93-214)||(19375480-19375601)
chr3 (100-200)||(19333802-19333902)
chr3 (74-193)||(18146597-18146716)
chr3 (74-187)||(25462817-25462930)
chr3 (93-189)||(19380679-19380775)
chr3 (93-185)||(19392935-19393027)
chr3 (74-189)||(18144009-18144124)
chr3 (73-208)||(24493517-24493652)
chr3 (21-68)||(18144162-18144209)
chr3 (93-168)||(19436654-19436729)
chr3 (74-142)||(16676986-16677054)
chr3 (93-193)||(18164942-18165042)
chr3 (20-76)||(19424548-19424604)
chr3 (103-214)||(17949624-17949735)
chr3 (99-190)||(18103222-18103313)
chr3 (20-67)||(19351326-19351373)
chr3 (20-70)||(18103350-18103400)
chr3 (20-70)||(19333941-19333991)
chr3 (20-69)||(17949760-17949809)
chr3 (20-69)||(18108371-18108420)
chr3 (104-192)||(18108236-18108324)
chr3 (20-72)||(25462982-25463034)
chr3 (20-79)||(14896399-14896458)
chr3 (20-70)||(17941886-17941936)
chr3 (20-66)||(19414116-19414162)
chr3 (20-70)||(19436962-19437012)
chr3 (20-70)||(19461464-19461514)
chr3 (20-69)||(18115897-18115946)
chr3 (4-68)||(18146743-18146810)
chr3 (20-76)||(16677151-16677207)
chr3 (20-68)||(19393081-19393129)
[»] scaffold2156 (1 HSPs)
scaffold2156 (73-214)||(21-162)
[»] scaffold0640 (1 HSPs)
scaffold0640 (73-214)||(5169-5310)
[»] chr6 (1 HSPs)
chr6 (93-201)||(13666986-13667094)
[»] chr8 (1 HSPs)
chr8 (93-214)||(8459262-8459383)
[»] chr4 (2 HSPs)
chr4 (76-193)||(2710690-2710807)
chr4 (93-214)||(15532137-15532258)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17941648 - 17941876
Alignment:
Q  1 ggggagcaatatatatgatataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaacaacttcatgatcagctcatctatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  17941648 ggggagcaatatatatgatataccttcaagcttactaaaccttcagaaattgagatgccttgatctctctcaaaactacttcatgatcagctcatctatt 17941747  T
Q  101 gagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaaaatctca 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  17941748 gagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaatttcacctctcatatacctgatgggttttttaatctcaccaaagatctca 17941847  T
Q  201 cttatctttaccttcgcgggagcaatata 229  Q
    |||||||| |||||| || ||||||||||    
T  17941848 cttatcttgaccttcacgagagcaatata 17941876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 17941524 - 17941662
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17941524 catctgttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatttcacctcttatatacctgatgggttttttaatctcaccaa 17941623  T
Q  193 aaatctcacttatctttaccttcgcgggagcaatatata 231  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  17941624 aaatctcacttatctttaccttcgggggagcaatatata 17941662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19461318 - 19461439
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||| |||||||| || ||||||||||||||||||||||||||||    
T  19461318 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaatttcacctctcatttacctgatgggttttttaatctcaccaa 19461417  T
Q  193 aaatctcacttatctttacctt 214  Q
    | |||||||||||||| |||||    
T  19461418 agatctcacttatcttgacctt 19461439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 18015880 - 18016001
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||   |||||  |||||||| |||||||||||||||||||||||||||||||    
T  18015880 catctgttgagtatttgaatttgccttcacttgtaactctttctctttctttcaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 18015979  T
Q  193 aaatctcacttatctttacctt 214  Q
    | ||||||| | |||| |||||    
T  18015980 agatctcacctctcttgacctt 18016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 19424382 - 19424517
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||| |||  |||||||   |||||| || ||||| || ||||||||    
T  19424382 aaacaacttcatgatcaacccatcaattgagtatttgaatttgtcttcaattgtaacacttgatctttctttcaacaatttcgcctctcatttacctgat 19424481  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctt 208  Q
    ||||||||||||||||||||| ||||||| ||||||    
T  19424482 gggttttttaatctcaccaaagatctcacctatctt 19424517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 14896623 - 14896482
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 173  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||| ||||  |||||||  ||||||  |||||||| || | ||  |||    
T  14896623 aacaacttcatgttcaactcatcttttgagtatttgaatttgtcttcaattgtaattcttaatctttctttaaacaacttcacctctcatttgccaaatg 14896524  T
Q  174 ggttttttaatctcaccaaaaatctcacttatctttaccttc 215  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  14896523 ggttttttaatctcacaaaaaatctcacctatctttaccttc 14896482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 18115751 - 18115872
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||  |||||||| || |||||||||||||||||||||| |||||    
T  18115751 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaacttcacctctcatttacctgatgggttttttaatcttaccaa 18115850  T
Q  193 aaatctcacttatctttacctt 214  Q
    | |||||||||||||| |||||    
T  18115851 agatctcacttatcttgacctt 18115872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19399494 - 19399615
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||| |  |||||  |||||| | ||||||||||||||||||||||| |||||||    
T  19399494 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaa 19399593  T
Q  193 aaatctcacttatctttacctt 214  Q
    | ||||||| | ||||||||||    
T  19399594 agatctcacctgtctttacctt 19399615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 18022574 - 18022688
Alignment:
Q  79 cttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttt 178  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||||   |||||  |||||||| || ||||  ||||||||    
T  18022574 cttcatgatcaacccatctattgagtatttgaatttgtcttcacttgtaactcttgatctttctttcaacaacttcacctctcatttaccaaatgggttt 18022673  T
Q  179 tttaatctcaccaaa 193  Q
    |||||||||||||||    
T  18022674 tttaatctcaccaaa 18022688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19351180 - 19351301
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||| | |||| ||  ||| || | || |||| |||||||||||||||||||||||    
T  19351180 catctgttgagtatttgaatttgtcttcacttgtaactcttgatctttttcgaaataacttcaactttaatttaccagatgggttttttaatctcaccaa 19351279  T
Q  193 aaatctcacttatctttacctt 214  Q
    | |||||||||||||| |||||    
T  19351280 agatctcacttatcttcacctt 19351301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19413970 - 19414091
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| ||||| ||||||||||||||||| |||||||||||  |||||||   |||||  |||||||| |||||||||||||||||||||||||||||||    
T  19413970 catctgttgagcatttgaatttgtcttcaattgtaactcttgatctttcttacaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 19414069  T
Q  193 aaatctcacttatctttacctt 214  Q
    | ||||||| | |||| |||||    
T  19414070 agatctcacctctcttgacctt 19414091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 17727914 - 17727759
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||||||| |||||| |  ||| || |||||||| |  | |||| |    
T  17727914 aaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctca-cttcctggt 17727816  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctttaccttcgcgggagcaatata 229  Q
    || |||||||||||||||||| ||||||| ||| || |||||| || ||||||||||    
T  17727815 ggattttttaatctcaccaaagatctcacctatgttgaccttcacgagagcaatata 17727759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 19029143 - 19028988
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||||||| |||||| |  ||| || |||||||| |  | |||| |    
T  19029143 aaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctca-cttcctggt 19029045  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctttaccttcgcgggagcaatata 229  Q
    || |||||||||||||||||| ||||||| ||| || |||||| || ||||||||||    
T  19029044 ggattttttaatctcaccaaagatctcacctatgttgaccttcacgagagcaatata 19028988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19436816 - 19436937
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctaga-aacaatatcacctcttatatacctgatgggttttttaatctcacca 191  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||| ||| ||| || |||||||| |  |||| ||||||||||||||||||||||    
T  19436816 catctattcagtatttaaatttgtcttcacttgtaactctttatctttc-agataacgatttcacctctcacttaccggatgggttttttaatctcacca 19436914  T
Q  192 aaaatctcacttatctttacctt 214  Q
    || ||||||| | ||||||||||    
T  19436915 aagatctcacctctctttacctt 19436937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19375480 - 19375601
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||| |||||||||||||||| |||||| ||||  |||||||  ||||||| |||||| | || ||||||||||||||||||||||||||||    
T  19375480 catctgttgagtttttgaatttgtcttcaattgtaagtcttgatctttcttcaaacaatttcacctttcatttacctgatgggttttttaatctcaccaa 19375579  T
Q  193 aaatctcacttatctttacctt 214  Q
    | || |||| |||||| |||||    
T  19375580 agatatcacctatcttgacctt 19375601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 19333802 - 19333902
Alignment:
Q  100 tgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaaaatctc 199  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||||||  | |||||| || ||| ||||||||||||||||||  ||||| |||||    
T  19333802 tgagtatttgaatttgtcttcaattgtaactcttgatctttctagaaacaactttacctctcatttacttgatgggttttttaatctttccaaagatctc 19333901  T
Q  200 a 200  Q
    |    
T  19333902 a 19333902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 18146597 - 18146716
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 173  Q
    ||||||||||| || | | ||||||||| |||||||||||||||||||||| ||||||||  ||||||  |||| ||| | |||||| || |||||||||    
T  18146597 aacaacttcataattaacacatctattgggtatttgaatttgtcttcacttataactcttgatctttcaggaaataatttaacctctcatttacctgatg 18146696  T
Q  174 ggttttttaatctcaccaaa 193  Q
    ||| ||||||||| ||||||    
T  18146697 ggtattttaatcttaccaaa 18146716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 25462817 - 25462930
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 173  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||| ||| ||||||||  |||||||   |||||  |||||||| || |||||||||    
T  25462817 aacaacttcatgaccaaatcatctattgggtatttgaatttgtcttcgcttttaactcttgatctttcttacaacaacttcacctctcatttacctgatg 25462916  T
Q  174 ggttttttaatctc 187  Q
    | ||||||||||||    
T  25462917 gtttttttaatctc 25462930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 19380679 - 19380775
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcac 189  Q
    ||||| ||||||||||||||||||||||||||||||||||   ||||||| |||||||  |||||||| |  |||| |||||||| |||||||||||    
T  19380679 catctgttgagtatttgaatttgtcttcacttgtaactctccatctttctggaaacaacttcacctctcacttaccagatgggttgtttaatctcac 19380775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 19392935 - 19393027
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatc 185  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||||   |||||  |||||||  |||||||| |||||||||||||||    
T  19392935 catcttttgagtatttgaatttgtcttcacttgtaactcttgatctttcttacaacaacttcacctccaatatacctaatgggttttttaatc 19393027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 18144009 - 18144124
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 173  Q
    |||||||| ||||||| | ||| |||  |||||||||||||||| ||| |||||||||||  |||||||  ||||||  |||||||| || ||||||||     
T  18144009 aacaacttaatgatcaacccatatatcaagtatttgaatttgtcgtcaattgtaactcttgatctttctttaaacaacttcacctctcatttacctgata 18144108  T
Q  174 ggttttttaatctcac 189  Q
    ||||||||||||||||    
T  18144109 ggttttttaatctcac 18144124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 24493652 - 24493517
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    ||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||  |||||||  ||||||  ||| |||| |  ||||  ||    
T  24493652 aaacaacttcatgatcaactcattttttgagtattcgaatttgtcttcacttgtaactcttgatctttctgaaaacaacttcagctctcagttaccaaat 24493553  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctt 208  Q
    |  |||||||| ||||||||| || |||| ||||||    
T  24493552 gcattttttaacctcaccaaagatatcacctatctt 24493517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 18144162 - 18144209
Alignment:
Q  21 taccttcaagcttactaaaccttcagaaattgagataccttgatctct 68  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  18144162 taccttcaagcttgctaaaccttcagaaatcgagataccttgatctct 18144209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 19436654 - 19436729
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacc 168  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  ||||||| |||||||  ||||||||||| ||||    
T  19436654 catctgttgagtatttcaatttatcttcacttgtaactcttgatctttctggaaacaaattcacctcttatttacc 19436729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 16676986 - 16677054
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttct 142  Q
    |||||||||||| ||| ||||||||||| |||||||||||  |||||| |||||||||||  |||||||    
T  16676986 aacaacttcatgctcaactcatctattgggtatttgaattcctcttcaattgtaactcttgatctttct 16677054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 18164942 - 18165042
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| || ||||| |||||||||||||| |||||||||||  |||||||   ||| || |||||||| |  ||| |||||| |||||||||||||||||    
T  18164942 catcttttaagtatgtgaatttgtcttcaattgtaactcttgatctttcttacaactatttcacctctcacttacttgatggattttttaatctcaccaa 18165041  T
Q  193 a 193  Q
    |    
T  18165042 a 18165042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 19424548 - 19424604
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaac 76  Q
    |||||||||||||| ||||||||||| || |||| |||||||||||||||| |||||    
T  19424548 ataccttcaagcttgctaaaccttcaaaatttgacataccttgatctctctgaaaac 19424604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 17949624 - 17949735
Alignment:
Q  103 gtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaaaatctcact 202  Q
    |||||||||||| ||||||||||||||||||| ||||  |  ||||||  |||||||  || ||||  |||||||||| |||||||||||| || ||||     
T  17949624 gtatttgaatttatcttcacttgtaactctttatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaaagatatcacc 17949723  T
Q  203 tatctttacctt 214  Q
    | |||| |||||    
T  17949724 tctcttgacctt 17949735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 18103222 - 18103313
Alignment:
Q  99 ttgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcacc 190  Q
    |||||||||||||||||| |||| ||||||| |||  ||||||   ||||||| |||| | | || ||| ||||||||||||||||||||||    
T  18103222 ttgagtatttgaatttgtattcaattgtaacccttgatctttcagaaaacaatttcacttttcatttacatgatgggttttttaatctcacc 18103313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 19351326 - 19351373
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctc 67  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  19351326 ataccttcaagcttactaaaccttcaaaaactgagacaccttgatctc 19351373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 18103350 - 18103400
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||||||    
T  18103350 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 18103400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 19333941 - 19333991
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||||||    
T  19333941 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 19333991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 17949760 - 17949809
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 69  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  17949760 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 17949809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 18108371 - 18108420
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 69  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  18108371 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 18108420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 18108236 - 18108324
Alignment:
Q  104 tatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||||||||||||||||||||||||||||  ||||  |  ||||||  |||||||  || ||||  |||||||||| |||||||||||    
T  18108236 tatttgaatttgtcttcacttgtaactcttaatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaa 18108324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 25462982 - 25463034
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctca 72  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||| |||||    
T  25462982 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatctca 25463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 14896458 - 14896399
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaacaac 79  Q
    |||||||||||||| ||||||||||| |  || ||| |||||||||||||| ||||||||    
T  14896458 ataccttcaagcttgctaaaccttcaaattttaagacaccttgatctctctaaaaacaac 14896399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 17941886 - 17941936
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||||||||| ||||||||||| || |||||| ||||| ||||||||    
T  17941886 ataccttcaagcttgctaaaccttcaaaatttgagacacctttatctctct 17941936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 19414116 - 19414162
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatct 66  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||    
T  19414116 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct 19414162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 19436962 - 19437012
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||| ||||| ||||||||||| || |||||| ||||||||||||||    
T  19436962 ataccttctagcttgctaaaccttcaaaatttgagacaccttgatctctct 19437012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 19461464 - 19461514
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||||||||| ||||||||||| || |||||| ||||| ||||||||    
T  19461464 ataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctct 19461514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 18115897 - 18115946
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 69  Q
    |||||||||||||| ||||||||||| || |||||| ||||| |||||||    
T  18115897 ataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctc 18115946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 18146743 - 18146810
Alignment:
Q  4 gagcaatatatatgat---ataccttcaagcttactaaaccttcagaaattgagataccttgatctct 68  Q
    |||||||||||||| |   |||||||||||||| ||||||||||| || |||||| ||||| ||||||    
T  18146743 gagcaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttaatctct 18146810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 16677151 - 16677207
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaac 76  Q
    ||||||||||||||  ||||||||||  | |||||| |||||||| |||||||||||    
T  16677151 ataccttcaagcttgttaaaccttcaacatttgagacaccttgatgtctctcaaaac 16677207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 19393081 - 19393129
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctct 68  Q
    ||||||||||| || ||||||||||| || |||||||||||| ||||||    
T  19393081 ataccttcaagtttgctaaaccttcaaaatttgagataccttaatctct 19393129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 162 - 21
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  | |||||  || ||||  ||    
T  162 aaacaacttcatgatcaatccatctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaat 63  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctttacctt 214  Q
    |||||||||||||| |||||| || |||| | |||| |||||    
T  62 gggttttttaatctaaccaaagatatcacctctcttgacctt 21  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 5169 - 5310
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  | |||||  || ||||  ||    
T  5169 aaacaacttcatgatcaaaccatctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaat 5268  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctttacctt 214  Q
    |||||||||||||| |||||| || |||| | |||| |||||    
T  5269 gggttttttaatctaaccaaagatatcacctctcttgacctt 5310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 13667094 - 13666986
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||||||||||||||||||| || |||||||||  |||||||  ||||||  |||||||| |||||||| ||| ||||||||||||||||||    
T  13667094 catctcttgagtatttgaatttgtcttcgctggtaactcttgatctttctgaaaacaacttcacctctcatatacctaatgagttttttaatctcaccaa 13666995  T
Q  193 aaatctcac 201  Q
    |||||||||    
T  13666994 aaatctcac 13666986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 8459262 - 8459383
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||| | |||||  |||| |||  | ||||| |||||||||||||||| |||||    
T  8459262 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcacatctcctttacctaatgggttttttaatctgaccaa 8459361  T
Q  193 aaatctcacttatctttacctt 214  Q
    | || |||| |||||| |||||    
T  8459362 agatatcacctatcttgacctt 8459383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 2710807 - 2710690
Alignment:
Q  76 caacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatggg 175  Q
    |||||||||||||| | | |||||||  ||||||||||||||||||||| ||||||||   |||||| | |||||  ||||||||  | ||||  |||||    
T  2710807 caacttcatgatcaacccgtctattgcatatttgaatttgtcttcacttataactcttgaactttcttggaacaacttcacctctcctttaccaaatggg 2710708  T
Q  176 ttttttaatctcaccaaa 193  Q
    ||||||||||||||||||    
T  2710707 ttttttaatctcaccaaa 2710690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 15532137 - 15532258
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||| | |||||  ||| |  | || ||||  ||||||||||||||||  ||||    
T  15532137 catctatcgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcagccatcatttaccaaatgggttttttaatctttccaa 15532236  T
Q  193 aaatctcacttatctttacctt 214  Q
    | |||||| ||||||| |||||    
T  15532237 atatctcaattatcttgacctt 15532258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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