View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11290_low_1 (Length: 453)
Name: NF11290_low_1
Description: NF11290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11290_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 224 - 438
Target Start/End: Original strand, 34647773 - 34647989
Alignment:
| Q |
224 |
catttgtttgtcgatacgtaaatttcatcaatgccc--aatcttcaagcactcaagtgaaaccacgtaagcaccggccaaaccactatttttcttttggg |
321 |
Q |
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| T |
34647773 |
catttgtccgtcgatacataaatttcatcaatgccacaaatcttcaagcactcaagtgaaaccacgtaagcaccggccaaaccactatttttcttttggg |
34647872 |
T |
|
| Q |
322 |
gtaggatagccaagccattcttaaatttgtgtggataatcaatgaacttgcatttgcagtgtggacacattctttttaacaatataacaccacttcatta |
421 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34647873 |
gtaggatagcaaagccattcttaaatttgtgtggataatcaatgaacttgcatttgcagtgtggacacattctttttaacaatataacaccacttcatta |
34647972 |
T |
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| Q |
422 |
tacagtatggacaaact |
438 |
Q |
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||||||||||||||||| |
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| T |
34647973 |
tacagtatggacaaact |
34647989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 39488726 - 39488577
Alignment:
| Q |
1 |
agtaagcacttataaatttggtctttgatacctttgtaaactagcaataattaagcacataaggcactgtatttcaatcaagtttcgacacatgtcagta |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39488726 |
agtaagcatttataaatttggtctttgatacctttgtaaaatagcagtaa----gcacataaggcactgtatttcaatcaagtttcgacacatgtca--a |
39488633 |
T |
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| Q |
101 |
tatcaaacgagtatgtaaaaacttaaagggtgtccatccatttttcacaatgtttt |
156 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39488632 |
tatcaaacgagtatgtaaaaacttaaagggcgtccatccatttttcacaatgtttt |
39488577 |
T |
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