View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11290_low_2 (Length: 232)

Name: NF11290_low_2
Description: NF11290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11290_low_2
NF11290_low_2
[»] chr3 (45 HSPs)
chr3 (1-229)||(17941648-17941876)
chr3 (93-231)||(17941524-17941662)
chr3 (93-214)||(19461318-19461439)
chr3 (93-214)||(18015880-18016001)
chr3 (73-208)||(19424382-19424517)
chr3 (74-215)||(14896482-14896623)
chr3 (93-214)||(18115751-18115872)
chr3 (93-214)||(19399494-19399615)
chr3 (79-193)||(18022574-18022688)
chr3 (93-214)||(19351180-19351301)
chr3 (93-214)||(19413970-19414091)
chr3 (73-229)||(17727759-17727914)
chr3 (73-229)||(19028988-19029143)
chr3 (93-214)||(19436816-19436937)
chr3 (93-214)||(19375480-19375601)
chr3 (100-200)||(19333802-19333902)
chr3 (74-193)||(18146597-18146716)
chr3 (74-187)||(25462817-25462930)
chr3 (93-189)||(19380679-19380775)
chr3 (93-185)||(19392935-19393027)
chr3 (74-189)||(18144009-18144124)
chr3 (73-208)||(24493517-24493652)
chr3 (21-68)||(18144162-18144209)
chr3 (93-168)||(19436654-19436729)
chr3 (74-142)||(16676986-16677054)
chr3 (93-193)||(18164942-18165042)
chr3 (20-76)||(19424548-19424604)
chr3 (103-214)||(17949624-17949735)
chr3 (99-190)||(18103222-18103313)
chr3 (20-67)||(19351326-19351373)
chr3 (20-70)||(18103350-18103400)
chr3 (20-70)||(19333941-19333991)
chr3 (20-69)||(17949760-17949809)
chr3 (20-69)||(18108371-18108420)
chr3 (104-192)||(18108236-18108324)
chr3 (20-72)||(25462982-25463034)
chr3 (20-79)||(14896399-14896458)
chr3 (20-70)||(17941886-17941936)
chr3 (20-66)||(19414116-19414162)
chr3 (20-70)||(19436962-19437012)
chr3 (20-70)||(19461464-19461514)
chr3 (20-69)||(18115897-18115946)
chr3 (4-68)||(18146743-18146810)
chr3 (20-76)||(16677151-16677207)
chr3 (20-68)||(19393081-19393129)
[»] scaffold2156 (1 HSPs)
scaffold2156 (73-214)||(21-162)
[»] scaffold0640 (1 HSPs)
scaffold0640 (73-214)||(5169-5310)
[»] chr6 (1 HSPs)
chr6 (93-201)||(13666986-13667094)
[»] chr8 (1 HSPs)
chr8 (93-214)||(8459262-8459383)
[»] chr4 (2 HSPs)
chr4 (76-193)||(2710690-2710807)
chr4 (93-214)||(15532137-15532258)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 45)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 17941648 - 17941876
Alignment:
Q  1 ggggagcaatatatatgatataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaacaacttcatgatcagctcatctatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  17941648 ggggagcaatatatatgatataccttcaagcttactaaaccttcagaaattgagatgccttgatctctctcaaaactacttcatgatcagctcatctatt 17941747  T
Q  101 gagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaaaatctca 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  17941748 gagtatttgaatttgtcttcacttgtaactctttctctttctggaaacaatttcacctctcatatacctgatgggttttttaatctcaccaaagatctca 17941847  T
Q  201 cttatctttaccttcgcgggagcaatata 229  Q
    |||||||| |||||| || ||||||||||    
T  17941848 cttatcttgaccttcacgagagcaatata 17941876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 17941524 - 17941662
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17941524 catctgttgaatatttgaatttgtcttcacttgtaactctttctctttctagaaacaatttcacctcttatatacctgatgggttttttaatctcaccaa 17941623  T
Q  193 aaatctcacttatctttaccttcgcgggagcaatatata 231  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  17941624 aaatctcacttatctttaccttcgggggagcaatatata 17941662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19461318 - 19461439
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||| |||||||| || ||||||||||||||||||||||||||||    
T  19461318 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaatttcacctctcatttacctgatgggttttttaatctcaccaa 19461417  T
Q  193 aaatctcacttatctttacctt 214  Q
    | |||||||||||||| |||||    
T  19461418 agatctcacttatcttgacctt 19461439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 18015880 - 18016001
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||||||   |||||  |||||||| |||||||||||||||||||||||||||||||    
T  18015880 catctgttgagtatttgaatttgccttcacttgtaactctttctctttctttcaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 18015979  T
Q  193 aaatctcacttatctttacctt 214  Q
    | ||||||| | |||| |||||    
T  18015980 agatctcacctctcttgacctt 18016001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 208
Target Start/End: Original strand, 19424382 - 19424517
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||| ||||||| |||  |||||||   |||||| || ||||| || ||||||||    
T  19424382 aaacaacttcatgatcaacccatcaattgagtatttgaatttgtcttcaattgtaacacttgatctttctttcaacaatttcgcctctcatttacctgat 19424481  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctt 208  Q
    ||||||||||||||||||||| ||||||| ||||||    
T  19424482 gggttttttaatctcaccaaagatctcacctatctt 19424517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 14896623 - 14896482
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 173  Q
    |||||||||||| ||| ||||||| ||||||||||||||||||||||| |||||| ||||  |||||||  ||||||  |||||||| || | ||  |||    
T  14896623 aacaacttcatgttcaactcatcttttgagtatttgaatttgtcttcaattgtaattcttaatctttctttaaacaacttcacctctcatttgccaaatg 14896524  T
Q  174 ggttttttaatctcaccaaaaatctcacttatctttaccttc 215  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  14896523 ggttttttaatctcacaaaaaatctcacctatctttaccttc 14896482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 18115751 - 18115872
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| ||||||||||||||||||||| |||||||||||||  |||||||  ||||||  |||||||| || |||||||||||||||||||||| |||||    
T  18115751 catctgttgagtatttgaatttgtctttacttgtaactcttgatctttctttaaacaacttcacctctcatttacctgatgggttttttaatcttaccaa 18115850  T
Q  193 aaatctcacttatctttacctt 214  Q
    | |||||||||||||| |||||    
T  18115851 agatctcacttatcttgacctt 18115872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19399494 - 19399615
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||| |  |||||  |||||| | ||||||||||||||||||||||| |||||||    
T  19399494 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcaaacaacaacttcacctttcatatacctgatgggttttttaatttcaccaa 19399593  T
Q  193 aaatctcacttatctttacctt 214  Q
    | ||||||| | ||||||||||    
T  19399594 agatctcacctgtctttacctt 19399615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 18022574 - 18022688
Alignment:
Q  79 cttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttt 178  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||||||  |||||||   |||||  |||||||| || ||||  ||||||||    
T  18022574 cttcatgatcaacccatctattgagtatttgaatttgtcttcacttgtaactcttgatctttctttcaacaacttcacctctcatttaccaaatgggttt 18022673  T
Q  179 tttaatctcaccaaa 193  Q
    |||||||||||||||    
T  18022674 tttaatctcaccaaa 18022688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19351180 - 19351301
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||| | |||| ||  ||| || | || |||| |||||||||||||||||||||||    
T  19351180 catctgttgagtatttgaatttgtcttcacttgtaactcttgatctttttcgaaataacttcaactttaatttaccagatgggttttttaatctcaccaa 19351279  T
Q  193 aaatctcacttatctttacctt 214  Q
    | |||||||||||||| |||||    
T  19351280 agatctcacttatcttcacctt 19351301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19413970 - 19414091
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| ||||| ||||||||||||||||| |||||||||||  |||||||   |||||  |||||||| |||||||||||||||||||||||||||||||    
T  19413970 catctgttgagcatttgaatttgtcttcaattgtaactcttgatctttcttacaacaacttcacctctcatatacctgatgggttttttaatctcaccaa 19414069  T
Q  193 aaatctcacttatctttacctt 214  Q
    | ||||||| | |||| |||||    
T  19414070 agatctcacctctcttgacctt 19414091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 17727914 - 17727759
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||||||| |||||| |  ||| || |||||||| |  | |||| |    
T  17727914 aaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctca-cttcctggt 17727816  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctttaccttcgcgggagcaatata 229  Q
    || |||||||||||||||||| ||||||| ||| || |||||| || ||||||||||    
T  17727815 ggattttttaatctcaccaaagatctcacctatgttgaccttcacgagagcaatata 17727759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 73 - 229
Target Start/End: Complemental strand, 19029143 - 19028988
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    |||||||||| ||||||   ||||||||||||||||||||||||||||| |||||||||||| |||||| |  ||| || |||||||| |  | |||| |    
T  19029143 aaacaacttcctgatcaatccatctattgagtatttgaatttgtcttcaattgtaactctttatctttcaaacaacgatttcacctctca-cttcctggt 19029045  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctttaccttcgcgggagcaatata 229  Q
    || |||||||||||||||||| ||||||| ||| || |||||| || ||||||||||    
T  19029044 ggattttttaatctcaccaaagatctcacctatgttgaccttcacgagagcaatata 19028988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19436816 - 19436937
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctaga-aacaatatcacctcttatatacctgatgggttttttaatctcacca 191  Q
    |||||||| ||||||| ||||||||||||||||||||||||| |||||| ||| ||| || |||||||| |  |||| ||||||||||||||||||||||    
T  19436816 catctattcagtatttaaatttgtcttcacttgtaactctttatctttc-agataacgatttcacctctcacttaccggatgggttttttaatctcacca 19436914  T
Q  192 aaaatctcacttatctttacctt 214  Q
    || ||||||| | ||||||||||    
T  19436915 aagatctcacctctctttacctt 19436937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 19375480 - 19375601
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||| |||||||||||||||| |||||| ||||  |||||||  ||||||| |||||| | || ||||||||||||||||||||||||||||    
T  19375480 catctgttgagtttttgaatttgtcttcaattgtaagtcttgatctttcttcaaacaatttcacctttcatttacctgatgggttttttaatctcaccaa 19375579  T
Q  193 aaatctcacttatctttacctt 214  Q
    | || |||| |||||| |||||    
T  19375580 agatatcacctatcttgacctt 19375601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 200
Target Start/End: Original strand, 19333802 - 19333902
Alignment:
Q  100 tgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaaaatctc 199  Q
    |||||||||||||||||||||| |||||||||||  |||||||||||||||  | |||||| || ||| ||||||||||||||||||  ||||| |||||    
T  19333802 tgagtatttgaatttgtcttcaattgtaactcttgatctttctagaaacaactttacctctcatttacttgatgggttttttaatctttccaaagatctc 19333901  T
Q  200 a 200  Q
    |    
T  19333902 a 19333902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 74 - 193
Target Start/End: Original strand, 18146597 - 18146716
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 173  Q
    ||||||||||| || | | ||||||||| |||||||||||||||||||||| ||||||||  ||||||  |||| ||| | |||||| || |||||||||    
T  18146597 aacaacttcataattaacacatctattgggtatttgaatttgtcttcacttataactcttgatctttcaggaaataatttaacctctcatttacctgatg 18146696  T
Q  174 ggttttttaatctcaccaaa 193  Q
    ||| ||||||||| ||||||    
T  18146697 ggtattttaatcttaccaaa 18146716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 74 - 187
Target Start/End: Original strand, 25462817 - 25462930
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 173  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||| ||| ||||||||  |||||||   |||||  |||||||| || |||||||||    
T  25462817 aacaacttcatgaccaaatcatctattgggtatttgaatttgtcttcgcttttaactcttgatctttcttacaacaacttcacctctcatttacctgatg 25462916  T
Q  174 ggttttttaatctc 187  Q
    | ||||||||||||    
T  25462917 gtttttttaatctc 25462930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 189
Target Start/End: Original strand, 19380679 - 19380775
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcac 189  Q
    ||||| ||||||||||||||||||||||||||||||||||   ||||||| |||||||  |||||||| |  |||| |||||||| |||||||||||    
T  19380679 catctgttgagtatttgaatttgtcttcacttgtaactctccatctttctggaaacaacttcacctctcacttaccagatgggttgtttaatctcac 19380775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 19392935 - 19393027
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatc 185  Q
    ||||| |||||||||||||||||||||||||||||||||||  |||||||   |||||  |||||||  |||||||| |||||||||||||||    
T  19392935 catcttttgagtatttgaatttgtcttcacttgtaactcttgatctttcttacaacaacttcacctccaatatacctaatgggttttttaatc 19393027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 74 - 189
Target Start/End: Original strand, 18144009 - 18144124
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatg 173  Q
    |||||||| ||||||| | ||| |||  |||||||||||||||| ||| |||||||||||  |||||||  ||||||  |||||||| || ||||||||     
T  18144009 aacaacttaatgatcaacccatatatcaagtatttgaatttgtcgtcaattgtaactcttgatctttctttaaacaacttcacctctcatttacctgata 18144108  T
Q  174 ggttttttaatctcac 189  Q
    ||||||||||||||||    
T  18144109 ggttttttaatctcac 18144124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 73 - 208
Target Start/End: Complemental strand, 24493652 - 24493517
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    ||||||||||||||||| ||||| | ||||||||| |||||||||||||||||||||||||  |||||||  ||||||  ||| |||| |  ||||  ||    
T  24493652 aaacaacttcatgatcaactcattttttgagtattcgaatttgtcttcacttgtaactcttgatctttctgaaaacaacttcagctctcagttaccaaat 24493553  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctt 208  Q
    |  |||||||| ||||||||| || |||| ||||||    
T  24493552 gcattttttaacctcaccaaagatatcacctatctt 24493517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 18144162 - 18144209
Alignment:
Q  21 taccttcaagcttactaaaccttcagaaattgagataccttgatctct 68  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  18144162 taccttcaagcttgctaaaccttcagaaatcgagataccttgatctct 18144209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 19436654 - 19436729
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacc 168  Q
    ||||| |||||||||| ||||| ||||||||||||||||||  ||||||| |||||||  ||||||||||| ||||    
T  19436654 catctgttgagtatttcaatttatcttcacttgtaactcttgatctttctggaaacaaattcacctcttatttacc 19436729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 142
Target Start/End: Original strand, 16676986 - 16677054
Alignment:
Q  74 aacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttct 142  Q
    |||||||||||| ||| ||||||||||| |||||||||||  |||||| |||||||||||  |||||||    
T  16676986 aacaacttcatgctcaactcatctattgggtatttgaattcctcttcaattgtaactcttgatctttct 16677054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 18164942 - 18165042
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| || ||||| |||||||||||||| |||||||||||  |||||||   ||| || |||||||| |  ||| |||||| |||||||||||||||||    
T  18164942 catcttttaagtatgtgaatttgtcttcaattgtaactcttgatctttcttacaactatttcacctctcacttacttgatggattttttaatctcaccaa 18165041  T
Q  193 a 193  Q
    |    
T  18165042 a 18165042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 19424548 - 19424604
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaac 76  Q
    |||||||||||||| ||||||||||| || |||| |||||||||||||||| |||||    
T  19424548 ataccttcaagcttgctaaaccttcaaaatttgacataccttgatctctctgaaaac 19424604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 17949624 - 17949735
Alignment:
Q  103 gtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaaaaatctcact 202  Q
    |||||||||||| ||||||||||||||||||| ||||  |  ||||||  |||||||  || ||||  |||||||||| |||||||||||| || ||||     
T  17949624 gtatttgaatttatcttcacttgtaactctttatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaaagatatcacc 17949723  T
Q  203 tatctttacctt 214  Q
    | |||| |||||    
T  17949724 tctcttgacctt 17949735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 190
Target Start/End: Original strand, 18103222 - 18103313
Alignment:
Q  99 ttgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcacc 190  Q
    |||||||||||||||||| |||| ||||||| |||  ||||||   ||||||| |||| | | || ||| ||||||||||||||||||||||    
T  18103222 ttgagtatttgaatttgtattcaattgtaacccttgatctttcagaaaacaatttcacttttcatttacatgatgggttttttaatctcacc 18103313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 19351326 - 19351373
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctc 67  Q
    |||||||||||||||||||||||||| ||| ||||| |||||||||||    
T  19351326 ataccttcaagcttactaaaccttcaaaaactgagacaccttgatctc 19351373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 18103350 - 18103400
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||||||    
T  18103350 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 18103400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 19333941 - 19333991
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||||||    
T  19333941 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctct 19333991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 17949760 - 17949809
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 69  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  17949760 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 17949809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 18108371 - 18108420
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 69  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||||||    
T  18108371 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctctc 18108420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 192
Target Start/End: Original strand, 18108236 - 18108324
Alignment:
Q  104 tatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||||||||||||||||||||||||||||  ||||  |  ||||||  |||||||  || ||||  |||||||||| |||||||||||    
T  18108236 tatttgaatttgtcttcacttgtaactcttaatcttgatgaaaacaacttcacctcccatttaccaaatgggtttttcaatctcaccaa 18108324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 25462982 - 25463034
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctca 72  Q
    |||||||||||||| ||||||||||| || |||||| |||||||||| |||||    
T  25462982 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatctatctca 25463034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 14896458 - 14896399
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaacaac 79  Q
    |||||||||||||| ||||||||||| |  || ||| |||||||||||||| ||||||||    
T  14896458 ataccttcaagcttgctaaaccttcaaattttaagacaccttgatctctctaaaaacaac 14896399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 17941886 - 17941936
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||||||||| ||||||||||| || |||||| ||||| ||||||||    
T  17941886 ataccttcaagcttgctaaaccttcaaaatttgagacacctttatctctct 17941936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 19414116 - 19414162
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatct 66  Q
    |||||||||||||| ||||||||||| || |||||| ||||||||||    
T  19414116 ataccttcaagcttgctaaaccttcaaaatttgagacaccttgatct 19414162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 19436962 - 19437012
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||| ||||| ||||||||||| || |||||| ||||||||||||||    
T  19436962 ataccttctagcttgctaaaccttcaaaatttgagacaccttgatctctct 19437012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 19461464 - 19461514
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctct 70  Q
    |||||||||||||| ||||||||||| || |||||| ||||| ||||||||    
T  19461464 ataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctct 19461514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 18115897 - 18115946
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctc 69  Q
    |||||||||||||| ||||||||||| || |||||| ||||| |||||||    
T  18115897 ataccttcaagcttgctaaaccttcaaaatttgagagacctttatctctc 18115946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 68
Target Start/End: Original strand, 18146743 - 18146810
Alignment:
Q  4 gagcaatatatatgat---ataccttcaagcttactaaaccttcagaaattgagataccttgatctct 68  Q
    |||||||||||||| |   |||||||||||||| ||||||||||| || |||||| ||||| ||||||    
T  18146743 gagcaatatatatggtgagataccttcaagcttgctaaaccttcaaaatttgagacaccttaatctct 18146810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 16677151 - 16677207
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctctctcaaaac 76  Q
    ||||||||||||||  ||||||||||  | |||||| |||||||| |||||||||||    
T  16677151 ataccttcaagcttgttaaaccttcaacatttgagacaccttgatgtctctcaaaac 16677207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 19393081 - 19393129
Alignment:
Q  20 ataccttcaagcttactaaaccttcagaaattgagataccttgatctct 68  Q
    ||||||||||| || ||||||||||| || |||||||||||| ||||||    
T  19393081 ataccttcaagtttgctaaaccttcaaaatttgagataccttaatctct 19393129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2156 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold2156
Description:

Target: scaffold2156; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 162 - 21
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  | |||||  || ||||  ||    
T  162 aaacaacttcatgatcaatccatctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaat 63  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctttacctt 214  Q
    |||||||||||||| |||||| || |||| | |||| |||||    
T  62 gggttttttaatctaaccaaagatatcacctctcttgacctt 21  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 73 - 214
Target Start/End: Original strand, 5169 - 5310
Alignment:
Q  73 aaacaacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgat 172  Q
    |||||||||||||||||   |||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||  | |||||  || ||||  ||    
T  5169 aaacaacttcatgatcaaaccatctattgagtatttcaatttgtcttcacttgtaactctttatctttctggaaacaactttacctccaatttaccaaat 5268  T
Q  173 gggttttttaatctcaccaaaaatctcacttatctttacctt 214  Q
    |||||||||||||| |||||| || |||| | |||| |||||    
T  5269 gggttttttaatctaaccaaagatatcacctctcttgacctt 5310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 13667094 - 13666986
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||||||||||||||||||| || |||||||||  |||||||  ||||||  |||||||| |||||||| ||| ||||||||||||||||||    
T  13667094 catctcttgagtatttgaatttgtcttcgctggtaactcttgatctttctgaaaacaacttcacctctcatatacctaatgagttttttaatctcaccaa 13666995  T
Q  193 aaatctcac 201  Q
    |||||||||    
T  13666994 aaatctcac 13666986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 8459262 - 8459383
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||| |||||||||||||||||||||||||||||||||||  ||||||| | |||||  |||| |||  | ||||| |||||||||||||||| |||||    
T  8459262 catctcttgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcacatctcctttacctaatgggttttttaatctgaccaa 8459361  T
Q  193 aaatctcacttatctttacctt 214  Q
    | || |||| |||||| |||||    
T  8459362 agatatcacctatcttgacctt 8459383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 76 - 193
Target Start/End: Complemental strand, 2710807 - 2710690
Alignment:
Q  76 caacttcatgatcagctcatctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatggg 175  Q
    |||||||||||||| | | |||||||  ||||||||||||||||||||| ||||||||   |||||| | |||||  ||||||||  | ||||  |||||    
T  2710807 caacttcatgatcaacccgtctattgcatatttgaatttgtcttcacttataactcttgaactttcttggaacaacttcacctctcctttaccaaatggg 2710708  T
Q  176 ttttttaatctcaccaaa 193  Q
    ||||||||||||||||||    
T  2710707 ttttttaatctcaccaaa 2710690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 15532137 - 15532258
Alignment:
Q  93 catctattgagtatttgaatttgtcttcacttgtaactctttctctttctagaaacaatatcacctcttatatacctgatgggttttttaatctcaccaa 192  Q
    ||||||| |||||||||||||||||||||||||||||||||  ||||||| | |||||  ||| |  | || ||||  ||||||||||||||||  ||||    
T  15532137 catctatcgagtatttgaatttgtcttcacttgtaactcttgatctttcttggaacaacttcagccatcatttaccaaatgggttttttaatctttccaa 15532236  T
Q  193 aaatctcacttatctttacctt 214  Q
    | |||||| ||||||| |||||    
T  15532237 atatctcaattatcttgacctt 15532258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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