View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11291_high_2 (Length: 376)
Name: NF11291_high_2
Description: NF11291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11291_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 12472652 - 12472278
Alignment:
| Q |
1 |
tcacttttatccatcttgtagccaaccatcgcttgaattctcaggtaaagtacatttatttgaatttgaaattcatgtcttgatgccaatgcatttaagt |
100 |
Q |
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| T |
12472652 |
tcacttttatccatcttgtagccaaccatcgcttgaattctcaggtaaagtacatttatttgaatttgaaatgcatgtcttgatgccaatgcatttaagt |
12472553 |
T |
|
| Q |
101 |
gtccattacataaacatcataatgttttcagatacgccaacaaagttctcatttcttgagaggatttcagcaacttattcagaaggattggattgatatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12472552 |
gtccattacataaacatcataatgttttcagatacgccaacaaagttctcatttcttgagaggatttcagcaacttattcagaaggattggattgatatg |
12472453 |
T |
|
| Q |
201 |
tttaacgagcatgaacttcaggttctcttataacttaattcacttttaggcttctcctgttatttccttccccttattttctattttaatttttgctctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
12472452 |
tttaacgagcatgaacttcaggttctcttataacttaattcacttttaggcttctcctgttatttccttcccctcattttttattttaatttttgctctt |
12472353 |
T |
|
| Q |
301 |
gcattgtgctgttaagagtctgtttaacaaccaaatgcatatcattttctactgcatgtcataatatacctttgc |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12472352 |
gcattgtgctgttaagagtctgtttaacaaccaaatgcatatcattttctactgcatgtcataatatacctttgc |
12472278 |
T |
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