View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11292_high_1 (Length: 736)
Name: NF11292_high_1
Description: NF11292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11292_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 20 - 521
Target Start/End: Original strand, 43090488 - 43090992
Alignment:
| Q |
20 |
aaagcaaaatcaaacaacattaaaataatgaagtatataatgtatagagtgtgacattgcattgtggggctttatacattacacacatgaacaacttaca |
119 |
Q |
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| T |
43090488 |
aaagcaaaatcaaacaacattaaaataatgaagtatataatatatagagtgtgacattgcattgtggggctttatacattacacacatgaacaacttaca |
43090587 |
T |
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| Q |
120 |
aagtaacaaaccatgttatgttactattaaacaaatagaannnnnnnatgtagtaaaaaagaatcaccttggaagaatcaaattcttgaaaggtaaagca |
219 |
Q |
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| T |
43090588 |
aagtaacaaaccatgttatgttactattaaacaaatagaattttt--atgtagtaaaaaagaaacaccttggaagaatcaaattcttgaaaggtaaagca |
43090685 |
T |
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| Q |
220 |
gttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacag |
319 |
Q |
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| T |
43090686 |
gttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaagaagagaagtgaaacagaagaggcccacag |
43090785 |
T |
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| Q |
320 |
tgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatagatac-----ttcagtgtcctaaaa |
414 |
Q |
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| T |
43090786 |
tgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaaagatagatacttcagttcagtgtcctaaaa |
43090885 |
T |
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| Q |
415 |
tatctgacacactcttgaatgcattcctagttaatcttcccttcccttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtg |
514 |
Q |
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| T |
43090886 |
tatctgacacactcttgaatgcattcctagttaatcttcccatcccttatagttataacaaatatatcaacttcttcttctgctaaatttcttcaatgtg |
43090985 |
T |
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| Q |
515 |
tgtgtat |
521 |
Q |
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| T |
43090986 |
tgtgtat |
43090992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 522 - 716
Target Start/End: Original strand, 43091052 - 43091246
Alignment:
| Q |
522 |
aactccctaaatcaaagaaacagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
621 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43091052 |
aactccctaaatcaaagaaaaagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
43091151 |
T |
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| Q |
622 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
716 |
Q |
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| T |
43091152 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
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