View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11292_high_4 (Length: 527)
Name: NF11292_high_4
Description: NF11292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11292_high_4 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 527
Target Start/End: Complemental strand, 30399920 - 30399405
Alignment:
| Q |
11 |
cagagacagagacagagcaacttcagtagttgtcagagnnnnnnntgtgtgagaaagcagaggaacagtggcatgccacgactgagatttaaactagttt |
110 |
Q |
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| T |
30399920 |
cagagacagagacagagcaacttcagtagttgtcagagaaaaaaatgtgtgagaaagcagaggaacagtggcatgccacgactgagatttaaactagttt |
30399821 |
T |
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| Q |
111 |
tggcatttttctttggtgtaacgtaacgtgtttctgaaatttacattaaataaatttgaagtgtagatttattttgggtattcacagttttagtgcaagt |
210 |
Q |
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| T |
30399820 |
tggcatttttctttggtgtaatgtaacgtgtttctgaaatttacattaaataaatttgaagtgtagatttattttgggtattcacagttttagtgcaagt |
30399721 |
T |
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| Q |
211 |
taatctagacaaaaataaaatataaaatagtatttgatatcttcgtattaaagataaactcattataagataagattatggcttaaatatgtaaatagtt |
310 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
30399720 |
taatttagacaaaaataaaatataaaatagtatttgatatcttcgtattaaagataaactcattataatataagattatggcttaaatatgtaaatcgtt |
30399621 |
T |
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| Q |
311 |
ataaatgttttgctttccgtccctgccgtcataatnnnnnnntgattttgaattaatttgtcaataggatattggtaccaacattnnnnnnngtagaaca |
410 |
Q |
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||||||||||||||||| |||| ||||||||| || || ||||||||||||||||| |||||||||||||||||||||| |||| ||| |
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| T |
30399620 |
ataaatgttttgctttctgtccttgccgtcatcatacaaaaatgcttttgaattaatttgtccataggatattggtaccaacattaaaaaaagtag-aca |
30399522 |
T |
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| Q |
411 |
ataaattagtgaacccatggaacttacaaatttatagagagtatagtaaatataaattggacaataattgattgcgcctagcacaccagctaaatgcaat |
510 |
Q |
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|| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
30399521 |
atcaattagtgaaaccatggaacttacaattttatagagagtatagtaaatataaattggacaataattgattgcgcctagcacacaagctcaatgcaat |
30399422 |
T |
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| Q |
511 |
ggcgatttctctcttat |
527 |
Q |
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|||| |||||||||||| |
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| T |
30399421 |
ggcgctttctctcttat |
30399405 |
T |
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