View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11292_high_6 (Length: 330)
Name: NF11292_high_6
Description: NF11292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11292_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 4112255 - 4111942
Alignment:
| Q |
1 |
cagaggaaaaaacaatcaaagtaaatgaaaacagaacactcaccatacaatgcatctcccttttctgcatgatcaaattctgaaggaggactcacaatag |
100 |
Q |
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| T |
4112255 |
cagaggaaaaaacaatcaaagtaaatgaaaacagaacactcaccatacaatgcatctcccttttctgcatgatcaaattctgaaggaggactcacaatag |
4112156 |
T |
|
| Q |
101 |
ggtgcagcaccactcttccaccacgaatgttctatacaaatcatagtcataaatacaagttattactatatccatcataagaggacaatattaaacaaac |
200 |
Q |
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| T |
4112155 |
ggtgcagcaccactcttccaccacgaatgttctatacaaatcatagtcataaatacaagttattactatatccatcataagaggacaatattaaacaaac |
4112056 |
T |
|
| Q |
201 |
ctagcttaacatattgtaatgattttagaggtctttgtaaaaataacatcaagataaaagcatgtacacatatcctcgtaaaaattcaagctattatact |
300 |
Q |
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| T |
4112055 |
ctagcttaacatattgtaatgattttagagatcttagtaaaaataacatcaagataaaagcatgtacaca-atcctcgtaaaaattcaagctattatact |
4111957 |
T |
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| Q |
301 |
aaagatctaaagaat |
315 |
Q |
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| T |
4111956 |
aaagatctaaagaat |
4111942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 30901526 - 30901480
Alignment:
| Q |
38 |
actcaccatacaatgcatctcccttttctgcatgatcaaattctgaa |
84 |
Q |
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| T |
30901526 |
actcaccatttaatgcatcacccttttctgcatgatcaaactctgaa |
30901480 |
T |
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