View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11292_high_9 (Length: 267)
Name: NF11292_high_9
Description: NF11292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11292_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 40943449 - 40943216
Alignment:
| Q |
20 |
tgtgcaaatgaagaataatacctgatgagttctttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40943449 |
tgtgcaaatgaagaataatacctgatgagttctttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgt |
40943350 |
T |
|
| Q |
120 |
aactgtctgttcctttgttcatactctccatcacccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40943349 |
aactgtctgttcctttgttcatactctccatcacccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtc |
40943250 |
T |
|
| Q |
220 |
atgtgcagcaatggcagccacctgagaaatggtc |
253 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
40943249 |
atgtgcagcaatggcagccacctgagaaatggtc |
40943216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 38 - 253
Target Start/End: Complemental strand, 40956750 - 40956535
Alignment:
| Q |
38 |
tacctgatgagttctttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgtaactgtctgttcctttgt |
137 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40956750 |
tacctgatgagttctttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgtaactgtctgttcctttgt |
40956651 |
T |
|
| Q |
138 |
tcatactctccatcacccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtcatgtgcagcaatggcagc |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40956650 |
tcatactctccatcacccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtcatgtgcagcaatggcagc |
40956551 |
T |
|
| Q |
238 |
cacctgagaaatggtc |
253 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
40956550 |
cacctgagaaatggtc |
40956535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 252
Target Start/End: Original strand, 28187380 - 28187579
Alignment:
| Q |
53 |
ttctgcaaagcaccaccttgtttggtacggcggtgtgaggtggcgccgaatccggtggtgacaccgtaactgtctgttcctttgttcatactctccatca |
152 |
Q |
| |
|
|||||||| |||||||||||||| || | ||||| || || || || || |||||||| ||||| |||||||| || ||||| |||||||| ||||||| |
|
|
| T |
28187380 |
ttctgcaaggcaccaccttgtttagttctccggtgagaagtagcaccaaaaccggtggtaacaccataactgtccgtacctttattcatactatccatca |
28187479 |
T |
|
| Q |
153 |
cccaatcactgctggcctcaacaccagccctagcagattctgacagctccacctgcacaccatggtcatgtgcagcaatggcagccacctgagaaatggt |
252 |
Q |
| |
|
|||| ||||| || |||| |||||| ||||| || || || || ||||||||| |||||| ||||| | |||||| |||||||||||| |||||| |
|
|
| T |
28187480 |
cccagtcactacttgccttaacaccggcccttgccgactccgaaagctccaccctaacaccactatcatgggaagcaattccagccacctgagcaatggt |
28187579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University