View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11292_low_2 (Length: 668)
Name: NF11292_low_2
Description: NF11292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11292_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 19 - 661
Target Start/End: Original strand, 31274973 - 31275615
Alignment:
| Q |
19 |
tttcgttctctcatggaacgcggtggtgagtcgtttgacctaacaccgccgtaccggaatagcgattcggtgaatttaccgtttgattctgaagaagagg |
118 |
Q |
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| T |
31274973 |
tttcgttctctcatggaacgcggtggtgagtcgtttgacctaacaccgccgtaccggaatagcgattcggtgaatttaccgtttgattctgaagaagagg |
31275072 |
T |
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| Q |
119 |
atgaggaaattgacggtggtggtgaagaggatctgattccggttgccatgccggtaacagattacgaaattgtgattgatgcgttaccgtcggcgacaat |
218 |
Q |
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| T |
31275073 |
atgaggaaattgacggtggtggtgaagaggatctgattccggttgccatgccggtaacagattacgaaattgtgattgatgcgttaccgtcggcgacaat |
31275172 |
T |
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| Q |
219 |
taacgatcttcatgagatcgcgaaacgaatggttgccggtggatttgggaaagagtgttcgcatgtttacagtagttgccggagagaattcttggaggag |
318 |
Q |
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| T |
31275173 |
taacgatcttcatgagatcgcgaaacgaatggttgccggtggatttggaaaagagtgttcgcatgtgtatagcagttgccggagagaattcttggaggaa |
31275272 |
T |
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| Q |
319 |
agtttatcgagattagggttacagaagctgagtattgaagatgttcacaaaatgcagtggcaagatattgaagatgaaattgaaagatggcttaaaggtt |
418 |
Q |
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| T |
31275273 |
agtttatcgagattagggttacagaagctgagtattgaagatgttcacaaaatgcagtggcaagatattgaagatgaaattgaaagatggattaaaggtt |
31275372 |
T |
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| Q |
419 |
tcaatgttgctttgaagatactttttccgagtgagcgaagattatgcgatcgcgtgttttttggattctcttcagctgcagatttttctttcatggaggt |
518 |
Q |
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| T |
31275373 |
tcaatgttgctttgaagatactttttccgagtgagcgacgattatgcgatcgcgtgttttttggattctcttcagctgcagatttttctttcatggaggt |
31275472 |
T |
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| Q |
519 |
ttgtagaggttctacagttcagttgttgaatttcgctgatgcggtcgcaattggaagccgttcgccggagaggttgtttaaaattctggatgtgttcgaa |
618 |
Q |
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| T |
31275473 |
ttgtagaggttctacagttcagttgttgaatttcgccgatgcggtcgcaattggaagccgttcgccggagcggttgtttaaaattctggatgtgtttgaa |
31275572 |
T |
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| Q |
619 |
acattgcgtgacctgatttcggagtttgagttgttgttctgtg |
661 |
Q |
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| T |
31275573 |
acattgcgtgacctaatttcggagtttgagttgttgttctgtg |
31275615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 262 - 452
Target Start/End: Original strand, 26908634 - 26908824
Alignment:
| Q |
262 |
tttgggaaagagtgttcgcatgtttacagtagttgccggagagaattcttggaggagagtttatcgagattagggttacagaagctgagtattgaagatg |
361 |
Q |
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| T |
26908634 |
tttgggaaggagtgttcgcatgtttacggtggttgtaggagggagtttttggaagagagtttatcgagattagggttacagaaattgagtatttcggaag |
26908733 |
T |
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| Q |
362 |
ttcacaaaatgcagtggcaagatattgaagatgaaattgaaagatggcttaaaggtttcaatgttgctttgaagatactttttccgagtga |
452 |
Q |
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| T |
26908734 |
ttcataagatgcaatggcaagatcttgaagatgaaattgaacgatggattaaggcttcgaatgttgctctgaagattctgtttccgagtga |
26908824 |
T |
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