View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11292_low_5 (Length: 349)

Name: NF11292_low_5
Description: NF11292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11292_low_5
NF11292_low_5
[»] chr1 (11 HSPs)
chr1 (1-276)||(48629162-48629437)
chr1 (16-272)||(48661850-48662118)
chr1 (3-193)||(48667530-48667720)
chr1 (4-152)||(48617739-48617887)
chr1 (43-152)||(11547679-11547788)
chr1 (37-156)||(48585771-48585890)
chr1 (37-156)||(48640344-48640463)
chr1 (4-152)||(48653568-48653716)
chr1 (16-153)||(48657015-48657152)
chr1 (175-235)||(48653473-48653533)
chr1 (179-235)||(11547584-11547640)
[»] chr3 (1 HSPs)
chr3 (22-154)||(19665113-19665245)
[»] chr8 (3 HSPs)
chr8 (48-149)||(27224421-27224522)
chr8 (48-145)||(27228628-27228725)
chr8 (32-158)||(25892474-25892601)


Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 48629437 - 48629162
Alignment:
Q  1 ggaaaaatgggatccgaagttcccattcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctg 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48629437 ggaaaaatgggatccgaagttccccttcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctg 48629338  T
Q  101 caaagggtgcctctgtcatctttactacaacagagaaagcaggcaaagacatgcgaatcaccaacaaattagcaactccaataggcgatggttgcctcac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48629337 caaagggtgcctctgtcatctttactacaacagagaaagcaggcaaagacatgcgaatcaccaacaaattagcaactccaataggcgatggttgcctcac 48629238  T
Q  201 ttttgagttctttgatcattgtttactagatgatggttccattgaccatgcagagcttgagcttgttgggaggcag 276  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48629237 tttcgagttctttgatcattgtttactagatgatggttccattgaccatgcagagcttgagcttgttgggaggcag 48629162  T

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Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 48662118 - 48661850
Alignment:
Q  16 gaagttcccattcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctg 115  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  48662118 gaagctcccattcatatcctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaagtgtcttgctgcaaaaggtgcctctg 48662019  T
Q  116 tcatctttactacaacagagaaagcaggcaaagacatgcga------------atcaccaacaaattagcaactccaataggcgatggttgcctcacttt 203  Q
    |||| || || |||||||||||||| |||||||||||| ||            ||||||||||||||||||||||| ||||| |||||||  |||| |||    
T  48662018 tcattttcaccacaacagagaaagctggcaaagacatgggaattgttgacgacatcaccaacaaattagcaactccgataggtgatggttctctcatttt 48661919  T
Q  204 tgagttctttgatcattgtttactagatgatggttccattgaccatgcagagcttgagcttgttgggag 272  Q
     ||||||||||||||| ||||||||||| |||||||| || |||||||||| ||||||| | |||||||    
T  48661918 cgagttctttgatcatagtttactagataatggttccgttaaccatgcagaacttgagcgtattgggag 48661850  T

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Target: chr1; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 3 - 193
Target Start/End: Complemental strand, 48667720 - 48667530
Alignment:
Q  3 aaaaatgggatccgaagttcccattcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgca 102  Q
    |||||||| |||||||| | | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48667720 aaaaatggcatccgaagcttcaattcacatcctccttgtttcttttccagcacaaggacacataaaccctcttcttagactaggtaaatgtcttgctgca 48667621  T
Q  103 aagggtgcctctgtcatctttactacaacagagaaagcaggcaaagacatgcgaatcaccaacaaattagcaactccaataggcgatggtt 193  Q
    |||||||| ||||||||||| |  |||||||| ||||  |||||| | ||||||||||||||||||||||| |||||||| || |||||||    
T  48667620 aagggtgcttctgtcatcttcatcacaacagaaaaaggtggcaaaaatatgcgaatcaccaacaaattagctactccaattggtgatggtt 48667530  T

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Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 152
Target Start/End: Original strand, 48617739 - 48617887
Alignment:
Q  4 aaaatgggatccgaagttcccattcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaa 103  Q
    ||||||||||||||||    || ||||||||| ||| | |||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  48617739 aaaatgggatccgaagcaaacactcatatccttcttatctcttatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaa 48617838  T
Q  104 agggtgcctctgtcatctttactacaacagagaaagcaggcaaagacat 152  Q
    ||||||| ||||||||||| |  |||||||||||||| |||||||||||    
T  48617839 agggtgcttctgtcatcttcatcacaacagagaaagctggcaaagacat 48617887  T

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Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 11547788 - 11547679
Alignment:
Q  43 tcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagagaaagcag 142  Q
    |||||||||| |||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||| |  |||||| ||||||| |    
T  11547788 tcttttccaggacaaggacacataaaccctcttcttagattagcaaagtgtcttgctgcaaagggtgcttctgtcatcttcatcacaacaaagaaagctg 11547689  T
Q  143 gcaaagacat 152  Q
    ||||||||||    
T  11547688 gcaaagacat 11547679  T

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Target: chr1; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 48585890 - 48585771
Alignment:
Q  37 cttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagaga 136  Q
    ||||| |||||||||||||||||||||||||||| |||| || |||||||||| | ||||||||||||||||||| |||| ||||| || ||||||||||    
T  48585890 cttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagaga 48585791  T
Q  137 aagcaggcaaagacatgcga 156  Q
      || |||||| ||||||||    
T  48585790 cggctggcaaaaacatgcga 48585771  T

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Target: chr1; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 48640463 - 48640344
Alignment:
Q  37 cttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagaga 136  Q
    ||||| |||||||||||||||||||||||||||| |||| || |||||||||| | ||||||||||||||||||| |||| ||||| || ||||||||||    
T  48640463 cttgtctcttttccagcacaaggacacataaaccatcttgttggactaggaaagtatcttgctgcaaagggtgccactgttatcttcaccacaacagaga 48640364  T
Q  137 aagcaggcaaagacatgcga 156  Q
      || |||||| ||||||||    
T  48640363 cggctggcaaaaacatgcga 48640344  T

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Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 152
Target Start/End: Complemental strand, 48653716 - 48653568
Alignment:
Q  4 aaaatgggatccgaagttcccattcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaa 103  Q
    |||||| |||| |||| |||||||||| |||| ||| |||||| |||||||||||||||||| || ||| | ||||| |||| ||| ||| |||||||||    
T  48653716 aaaatgagatcggaagctcccattcatgtcctccttatttcttatccagcacaaggacacattaatcctttgcttagtctagcaaagtgtgttgctgcaa 48653617  T
Q  104 agggtgcctctgtcatctttactacaacagagaaagcaggcaaagacat 152  Q
    ||||||| |||||||| || |  |||||||| | ||| || ||||||||    
T  48653616 agggtgcttctgtcattttcatcacaacagaaagagctggaaaagacat 48653568  T

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Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 48657152 - 48657015
Alignment:
Q  16 gaagttcccattcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctg 115  Q
    |||| ||||||||| || || ||||| |||| |||  || | ||||| |||||| ||||||||| |||||| || |||||||||||||||||| | ||||    
T  48657152 gaagctcccattcagattctccttgtatcttatccttcatacggacatataaactctcttcttaaactagggaagtgtcttgctgcaaagggttcttctg 48657053  T
Q  116 tcatctttactacaacagagaaagcaggcaaagacatg 153  Q
    ||||||| || |||||  ||||||| ||||||||||||    
T  48657052 tcatcttcaccacaacgcagaaagctggcaaagacatg 48657015  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 48653533 - 48653473
Alignment:
Q  175 actccaataggcgatggttgcctcacttttgagttctttgatcattgtttactagatgatg 235  Q
    |||||||| || |||||||  ||||||||||||||||||||| ||||||||  ||||||||    
T  48653533 actccaattggtgatggttcactcacttttgagttctttgatgattgtttagaagatgatg 48653473  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 11547640 - 11547584
Alignment:
Q  179 caataggcgatggttgcctcacttttgagttctttgatcattgtttactagatgatg 235  Q
    |||||||  ||||||  ||||||||||||||||||||| || |||||| ||||||||    
T  11547640 caataggtaatggttctctcacttttgagttctttgatgatggtttacaagatgatg 11547584  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 19665113 - 19665245
Alignment:
Q  22 cccattcatatcctacttgtttcttttccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatct 121  Q
    |||||||| ||||| ||| | || | |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| | || |||||||    
T  19665113 cccattcacatcctccttatctcatatccagcacaaggacacataaaccctcttcttagactagcaaagtgtcttgctgcaaagggttcttcagtcatct 19665212  T
Q  122 ttactacaacagagaaagcaggcaaagacatgc 154  Q
    | |  || ||||||||||| |||||||||||||    
T  19665213 tcatcactacagagaaagctggcaaagacatgc 19665245  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 149
Target Start/End: Complemental strand, 27224522 - 27224421
Alignment:
Q  48 tccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagagaaagcaggcaaa 147  Q
    ||||||||||||||||||||| ||| | |||||||||||||| ||||||||  |||||||| | ||||| ||||| |  |||||||||||||| ||||||    
T  27224522 tccagcacaaggacacataaatcctatgcttagactaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaacagagaaagctggcaaa 27224423  T
Q  148 ga 149  Q
    ||    
T  27224422 ga 27224421  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 27228725 - 27228628
Alignment:
Q  48 tccagcacaaggacacataaaccctcttcttagactaggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaacagagaaagcaggca 145  Q
    ||||||||||||||||||||| ||| | |||||| ||||||| ||||||||  |||||||| | ||||| ||||| |  ||||| |||||||| ||||    
T  27228725 tccagcacaaggacacataaatcctatgcttagattaggaaagtgtcttgcatcaaagggttcttctgttatcttcatcacaactgagaaagctggca 27228628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 158
Target Start/End: Original strand, 25892474 - 25892601
Alignment:
Q  32 tcctacttgtttcttttccagcacaaggacacataaaccctcttcttagacta-ggaaaatgtcttgctgcaaagggtgcctctgtcatctttactacaa 130  Q
    |||| ||||| |||||||||   ||| ||||| |||||| ||||||| | ||| ||||||| ||||||||||| |||||| ||| ||||||| || ||||    
T  25892474 tcctccttgtctcttttccatttcaacgacacctaaaccatcttcttggtctaaggaaaatctcttgctgcaaggggtgcatctatcatcttcaccacaa 25892573  T
Q  131 cagagaaagcaggcaaagacatgcgaat 158  Q
    |||| | ||| |||| | ||||||||||    
T  25892574 cagaaacagccggcacaaacatgcgaat 25892601  T

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