View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11292_low_8 (Length: 310)
Name: NF11292_low_8
Description: NF11292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11292_low_8 |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 41876423 - 41876134
Alignment:
| Q |
21 |
tcaggcagtgttattatcctcccagctgctttagattgcgctgcatcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggcct |
120 |
Q |
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| T |
41876423 |
tcaggcaatgttattatcctcccagctgctttagattgcgctgcatcatcagctccttttggctcagcagccaaaatccgaatagacgggttaatggcct |
41876324 |
T |
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| Q |
121 |
tggcagctaatgctactcccgatgccataccaccgcctacaattttcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaac |
220 |
Q |
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| T |
41876323 |
tggcagctaatgctactcccgatgccataccaccgcctacaattttcattttgttggaaaatcgagaagagaatactaaaatttatgaaaattttaaaac |
41876224 |
T |
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| Q |
221 |
atttggttgatggattaaaataaaaatgagaacaaaccacttataggtactacaagagtatcaatcagaggggcttgttccaaaagctcc |
310 |
Q |
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| T |
41876223 |
atttggttgatggattaacataaaaatgagaacaaaccacttataggtactacaagagtatcaatctgaggggcttgttccaaaagctcc |
41876134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 282
Target Start/End: Original strand, 24817434 - 24817687
Alignment:
| Q |
31 |
ttattatcctcccagctgctttagattgcgctgcatcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaa |
130 |
Q |
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| T |
24817434 |
ttattatccttccggctgctttggattgagctgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctat |
24817533 |
T |
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| Q |
131 |
tgctactcccgatgccataccaccgcctacaattttcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaacatttggttga |
230 |
Q |
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| T |
24817534 |
tgctattcctgctatcataccgccgcctgcaagtatcattttgtaacaaaatcgataagaggatactaaattatatgcaaattgtgaaacattttgatga |
24817633 |
T |
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| Q |
231 |
tggattaaaataaaaa--tgagaacaaaccacttataggtactacaagagtatc |
282 |
Q |
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| T |
24817634 |
tggattgacgtaaaaaagagagaacaaaccacttattggtactacaagtgtatc |
24817687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 31 - 282
Target Start/End: Original strand, 24800358 - 24800611
Alignment:
| Q |
31 |
ttattatcctcccagctgctttagattgcgctgcatcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttggcagctaa |
130 |
Q |
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| T |
24800358 |
ttattatccttccggctgctttggattgagctgcatcatcagctcctttaggctcagcagccaaaatacgaatagccggattaatcgccttggcagctat |
24800457 |
T |
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| Q |
131 |
tgctactcccgatgccataccaccgcctacaattttcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaacatttggttga |
230 |
Q |
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| T |
24800458 |
tgctattcctgctatcataccgccacctgcaagtatcattttgtaacaaaatcgataagaggatactaaattatatgcaaattgtgaaacattttgatga |
24800557 |
T |
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| Q |
231 |
tggattaaaataaaaa--tgagaacaaaccacttataggtactacaagagtatc |
282 |
Q |
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| T |
24800558 |
tggattgacgtaaaaaagagagaacaaaccacttattggtactacaagtgtatc |
24800611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 310
Target Start/End: Original strand, 40867646 - 40867932
Alignment:
| Q |
24 |
ggcagtgttattatcctcccagctgctttagattgcgctgcatcatcaactccttttggctcagcagccaaaatccgaatagacgggttaatggccttgg |
123 |
Q |
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| T |
40867646 |
ggcaatgttattatccttccagctgctttagattgtgctgcgtcatcggcccctttaggttcagcagccaaaatacgaatggccgggttgatagacttgg |
40867745 |
T |
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| Q |
124 |
cagctaatgctactcccgatgccataccaccgcctacaattttcattttgttggaaaatcgagaagaggatactaaaatttatgaaaattttaaaaca-t |
222 |
Q |
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| T |
40867746 |
cagccaatgctactcctgatatcaaaccacctcctgcagttttca-tttgttggaaaatcaagaaggggataccaaaatcaatgcaaattttgaaacatt |
40867844 |
T |
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| Q |
223 |
ttggttgatggattaaaataaaaatgagaacaaaccacttataggtactacaagagtatcaatcagaggggcttgttccaaaagctcc |
310 |
Q |
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| T |
40867845 |
ttggatgatggtttgacatcaaaaagcaaacaaaccacttattggtaccacaagtgtatctagttgaggggcttgttccagaagctcc |
40867932 |
T |
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