View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_high_16 (Length: 358)
Name: NF11293A_high_16
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 4146095 - 4145753
Alignment:
| Q |
1 |
ttttgtttttatttgtacaagaaaaagctacccgcaaggaatacacaatttggcttcataggtaataaaataatgcaacttatgatttttccatgtaatt |
100 |
Q |
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| T |
4146095 |
ttttgtttttatttgtacaagaaaaagctacccgcaaggaatacacaatttggcttcataggtaataaaataatgcaacttatgatttttccatgtaatt |
4145996 |
T |
|
| Q |
101 |
cccattgcttagcacgttgctaaagtcaactaattgcaaactcaatagagcatctcaacgactccacaattcaacaacttcttccacgtgaatttgatta |
200 |
Q |
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| T |
4145995 |
cccattgcttagcacgttgctaaagtcaactaattgcaaactcaatagagcatctcaacgactccacaattcaacaacttcttccacgtgaatttgatta |
4145896 |
T |
|
| Q |
201 |
ggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaacaccattttgttacatgttcatggcttttctaagtcat |
300 |
Q |
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| T |
4145895 |
ggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaacaccattttgttacatgttcatggcttttctaagtcat |
4145796 |
T |
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| Q |
301 |
aacaaaaaccacttgttcataacattcctcatattttgcacat |
343 |
Q |
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| T |
4145795 |
aacaaaaaccacttgttcataacattcctcatattttgcacat |
4145753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 4124568 - 4124500
Alignment:
| Q |
193 |
tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcctagtattcctcaaaaaa |
262 |
Q |
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| T |
4124568 |
tttgaataggaatatgttacaaattacaaa-ctcatcaaaccaaactaagttctagtattcctcaaaaaa |
4124500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 343
Target Start/End: Complemental strand, 4135027 - 4134951
Alignment:
| Q |
268 |
ttttgttacatgttcatggctttt-ctaagtcataacaaaaaccacttgttcataacattcctcatattttgcacat |
343 |
Q |
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| T |
4135027 |
ttttgttacacatttatggctttttctaagtcataatataaatgacttattcattacattcctcatattttgcacat |
4134951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 4153885 - 4153845
Alignment:
| Q |
224 |
ctcatcaaaccaaattaaatcctagtattcctcaaaaaaca |
264 |
Q |
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| T |
4153885 |
ctcattaaaccaaactaaatcctagtattcctcaaaaaaca |
4153845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 4124482 - 4124408
Alignment:
| Q |
267 |
attttgttacatgttcatggcttttctaagtcataacaaaaaccacttgttcataacattcctcatattttgcac |
341 |
Q |
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| T |
4124482 |
attttgttacacattaatggcttttctacgtcataatacaaatgacttattcattacagtcctcatattttgcac |
4124408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 264
Target Start/End: Complemental strand, 4135160 - 4135044
Alignment:
| Q |
152 |
atctcaacgactccacaattcaacaa---cttcttccacgtgaa--tttgattaggaacatgaaacaaattacaaatctcatcaaaccaaattaaatcct |
246 |
Q |
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| T |
4135160 |
atctcaatgacgccacaattcaacaataacatcttccacatgatagtttgattaggaacatgttacaaattacaaa-ctcataaagcctatctaagttct |
4135062 |
T |
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| Q |
247 |
agtattcctcaaaaaaca |
264 |
Q |
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| T |
4135061 |
agtattcctcaaaaaaca |
4135044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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