View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_high_20 (Length: 319)

Name: NF11293A_high_20
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_high_20
NF11293A_high_20
[»] chr8 (3 HSPs)
chr8 (6-316)||(4146063-4146373)
chr8 (6-46)||(8018266-8018306)
chr8 (6-93)||(17654700-17654787)
[»] chr3 (1 HSPs)
chr3 (6-98)||(41430382-41430474)
[»] chr6 (1 HSPs)
chr6 (6-93)||(12734679-12734766)
[»] chr7 (1 HSPs)
chr7 (6-83)||(30269629-30269706)
[»] chr1 (2 HSPs)
chr1 (6-81)||(31525096-31525171)
chr1 (6-83)||(44269660-44269737)
[»] chr5 (2 HSPs)
chr5 (6-93)||(11106952-11107039)
chr5 (18-97)||(42367588-42367667)


Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 6 - 316
Target Start/End: Complemental strand, 4146373 - 4146063
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaacn 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4146373 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaacttaaca 4146274  T
Q  106 nnnnnntctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaag 205  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146273 aaaaaatctatacatcgattcacttctcggaaagtgtgatatatcgtaacatttcctttgctccaacaactatttatatatacacataaagagactaaag 4146174  T
Q  206 ggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgagttgacttctaagttcttttgtttttatttgtacaaga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4146173 ggcttaaggattgaaaatgtaaattttgacattaaagaagcgtgaatgcaagcaatactcgagttgacttctaagttcttttgtttttatttgtacaaga 4146074  T
Q  306 ataatctaccc 316  Q
    | || ||||||    
T  4146073 aaaagctaccc 4146063  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8018266 - 8018306
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagat 46  Q
    ||||||| ||||||||| |||||||||||||||||||||||    
T  8018266 aaaagtttcagctgcatcactccgaagaaaattcaaaagat 8018306  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 93
Target Start/End: Original strand, 17654700 - 17654787
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggca 93  Q
    ||||||| ||| ||||| ||||| ||||||||||||| ||| ||  | || |||| | |||||||||||||||||||| || ||||||    
T  17654700 aaaagtttcagatgcatcactccaaagaaaattcaaacgatccgatggagaagactcatgacaaagaaactcaaagtttgatgaggca 17654787  T

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Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 6 - 98
Target Start/End: Original strand, 41430382 - 41430474
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaaa 98  Q
    ||||||||||||||||| ||||||||||||||||||||||| || | ||| |||| |||||||||||||||||||||| || |||||| ||||    
T  41430382 aaaagttccagctgcatcactccgaagaaaattcaaaagatccgccaaaggagactcgtgacaaagaaactcaaagtttgatgaggcagcaaa 41430474  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 12734766 - 12734679
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggca 93  Q
    ||||||||||||||||| ||||||||||| ||||||||||| ||| | || |||| ||||| |||||||||||||||| || ||||||    
T  12734766 aaaagttccagctgcatcactccgaagaagattcaaaagatccgttggaggagactcgtgataaagaaactcaaagtttgatgaggca 12734679  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 30269629 - 30269706
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagtt 83  Q
    ||||||||||||||||| |||||||||||| || |||||||| || | || |||| ||||||||||||||||||||||    
T  30269629 aaaagttccagctgcatcactccgaagaaagttgaaaagatttgttggaggagactcgtgacaaagaaactcaaagtt 30269706  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 81
Target Start/End: Complemental strand, 31525171 - 31525096
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaag 81  Q
    ||||| ||||||||||| ||| ||||||| ||||||||||| ||| | || |||| ||||||||||||||||||||    
T  31525171 aaaagctccagctgcatcactgcgaagaagattcaaaagatccgttggaggagactcgtgacaaagaaactcaaag 31525096  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 44269660 - 44269737
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagtt 83  Q
    ||||||||||||||||| ||| ||||||| ||||||||||| |   | || |||| ||||||||||||||||||||||    
T  44269660 aaaagttccagctgcatcacttcgaagaagattcaaaagatccactggaggagactcgtgacaaagaaactcaaagtt 44269737  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 11107039 - 11106952
Alignment:
Q  6 aaaagttccagctgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggca 93  Q
    |||||||||| || ||| ||||||||||| ||||||||||| ||| | || |||| ||| ||||||||||||| |||| || ||||||    
T  11107039 aaaagttccaactacatcactccgaagaagattcaaaagatccgttggaggagactcgtaacaaagaaactcagagtttgatgaggca 11106952  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 97
Target Start/End: Original strand, 42367588 - 42367667
Alignment:
Q  18 tgcatgactccgaagaaaattcaaaagattcgtcgaagtagacacgtgacaaagaaactcaaagttcgacgaggcatcaa 97  Q
    ||||| ||||| ||||||| | ||||||| |||||||| |||| | ||||||||||||| |||||| || ||| ||||||    
T  42367588 tgcatcactccaaagaaaacttaaaagatccgtcgaagaagactcttgacaaagaaacttaaagtttgatgagtcatcaa 42367667  T

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