View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_high_29 (Length: 240)
Name: NF11293A_high_29
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_high_29 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 11505776 - 11505555
Alignment:
| Q |
19 |
acatcaatacaagaccaagaattcaaggaaaccaaccaaaaacatcacaacccagaatacaaaaacaataaaaatagaaactttatttacctgaacctgt |
118 |
Q |
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| T |
11505776 |
acatcaatacaagaccaagaattcaaggaaaccaaccaaaaacatcacaacccagaatacaaaaacaataaaaatagaaactttatttacctgaacctgt |
11505677 |
T |
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| Q |
119 |
ttggctttaacataaggagaatccccagaaggaaccttatgaataacatgaaaaagatcatctttattcacagaagctgctggtgatttctttctctcag |
218 |
Q |
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| T |
11505676 |
ttggctttaacataaggagaatccccagaaggaaccttatgaataacatgaaaaagatcatctttactcacagaagctgctggtgatttctttctctcag |
11505577 |
T |
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| Q |
219 |
aaaatggcacagtaggagaacg |
240 |
Q |
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| T |
11505576 |
aaaatggcacagtaggagaacg |
11505555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 103 - 240
Target Start/End: Complemental strand, 11498552 - 11498415
Alignment:
| Q |
103 |
atttacctgaacctgtttggctttaacataaggagaatccccagaaggaaccttatgaataacatgaaaaagatcatctttattcacagaagctgctggt |
202 |
Q |
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| T |
11498552 |
atttacctgaacctgtttggccttaacataaggagaatccccagaaggaaccttatgaataacatgaaaaagatcatctttattcattgaagctgctggt |
11498453 |
T |
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| Q |
203 |
gatttctttctctcagaaaatggcacagtaggagaacg |
240 |
Q |
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| T |
11498452 |
gatttctttctctctgaaaaaggcacagtaggagaacg |
11498415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 183
Target Start/End: Original strand, 21290132 - 21290209
Alignment:
| Q |
106 |
tacctgaacctgtttggctttaacataaggagaatccccagaaggaaccttatgaataacatgaaaaagatcatcttt |
183 |
Q |
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| T |
21290132 |
tacctgagcatgtttggctttgacataaggagtatcaccataaggaaccttatgaataacatgatagagatcttcttt |
21290209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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