View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_1 (Length: 688)
Name: NF11293A_low_1
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 590; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 590; E-Value: 0
Query Start/End: Original strand, 9 - 666
Target Start/End: Complemental strand, 8453619 - 8452972
Alignment:
| Q |
9 |
gtctttgtctagttaaaatccacgtagactaggggtgcgcactgcgctacctcatacattcatttaaactcatataactagctaagtgtgttgttgaatg |
108 |
Q |
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| T |
8453619 |
gtctttgtctagttaaaatccacgtagactaggggtgcacactgcgctacctcatacattcatttaaactcatataactaa------gtgttgttgaatg |
8453526 |
T |
|
| Q |
109 |
aaaagtgttaagttaattatatagagagatcatgggagatagagagagttgcaacagtagagctttgatcaattgtggatggagtcgtggtcggattgag |
208 |
Q |
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| T |
8453525 |
aaaagtgttaagttaattatatagagagatcatgggagatagagaaagttgcaacagtagagctttgatcaattgtggatggagtcgtggtcggattgag |
8453426 |
T |
|
| Q |
209 |
agtctcaaaattgaagtatacaatgagattcttggtagactcaaggaattgaatgtctcagaggccacacttccttattttgaagatgagctttgggggc |
308 |
Q |
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| T |
8453425 |
agtctcaaaattgaagtatacaatgagattcttggtagactcaaggaattgaatgtctcagaggccacacttccttattttgaagatgagctttgggggc |
8453326 |
T |
|
| Q |
309 |
acttcaatagccttccaactaggtatgcactggaaatgaatgttgagaaggccaaagatgttcttatgcataaaaggttacaacatatggcacgaactat |
408 |
Q |
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| T |
8453325 |
acttcaatagccttccaactaggtatgcactggaaatgaatgttgagaaggccaaagatgttcttatgcataaaaggttacaacatatggcacgaactat |
8453226 |
T |
|
| Q |
409 |
ttctagtacacctgcaattgaagtccgcctcctccaggtgatttatgcgaactttatggtgccgactaccaattatccaaatgatcatggcatcaatatc |
508 |
Q |
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| T |
8453225 |
ttctagtacacctgcaattgaagtccgcctcctccaggtgatttatgcgaactttatggtgccgactaccaattatccaaatgatcatggcatcaatatc |
8453126 |
T |
|
| Q |
509 |
tttctttcatgcaggttcgttctacttctggtgtacatttgagcaaatcccttcattccaacttacaaaaagaaaccagtactgatattccaagcaacat |
608 |
Q |
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| T |
8453125 |
----tttcatgcaggttcgttctacttctggtgtacattcgagcaaatcctttcattccaacttacaaaaagaaaccattactgatattccaagcaacat |
8453030 |
T |
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| Q |
609 |
gaggcatgattatgtgaaaattcacacatccttttcctctataaagtaatattatctg |
666 |
Q |
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| T |
8453029 |
gaggcatgattatgtgaaaattgacacatccttttcctctataaagtaatattatctg |
8452972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 328 - 389
Target Start/End: Complemental strand, 53664103 - 53664042
Alignment:
| Q |
328 |
taggtatgcactggaaatgaatgttgagaaggccaaagatgttcttatgcataaaaggttac |
389 |
Q |
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|||||||||| |||| |||||||| |||| ||| || |||| ||||||||||||||||||| |
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| T |
53664103 |
taggtatgcattggatatgaatgtggagagggctcaatatgtccttatgcataaaaggttac |
53664042 |
T |
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