View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_100 (Length: 302)
Name: NF11293A_low_100
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_100 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 13960610 - 13960318
Alignment:
| Q |
1 |
gaaatgacaactttggaaaacaaagccacttgagctgtcggatttggttcttccatcggcagctacgaaacattgttgttcttctaatggttttcttacg |
100 |
Q |
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| T |
13960610 |
gaaatgacaactttggaaaacaaagccacttgagctgtcagatttggttcttccatcggcagctacgaaacattgttgttcttctaatggttttcttacg |
13960511 |
T |
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| Q |
101 |
attagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgttgggattcgg |
200 |
Q |
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| T |
13960510 |
attagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgttgggattcgg |
13960411 |
T |
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| Q |
201 |
cgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatgtttctctg |
293 |
Q |
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| T |
13960410 |
cgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatgtttctctg |
13960318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 101 - 284
Target Start/End: Complemental strand, 13967674 - 13967491
Alignment:
| Q |
101 |
attagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattgacgttgggattcgg |
200 |
Q |
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| T |
13967674 |
attagtttgcaattttggaaaactccaaaggcgtcgccaaaaacaaagtcgattgtgccagagatggcgcagtcacggtagaattgacgttgggattgga |
13967575 |
T |
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| Q |
201 |
cgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgat |
284 |
Q |
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| T |
13967574 |
cgtagagtgtgtcttggaaaccgtccatttgacagttgtggaatattgcttgatctgctgttactcggagggcaactgcttgat |
13967491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 88 - 285
Target Start/End: Original strand, 49870992 - 49871189
Alignment:
| Q |
88 |
tggttttcttacgattagtttgcagttttggaaaactgcaaaggcgtcaccgtagatcatgtcgattgtgccagagatgctgcagtcacggtagaattga |
187 |
Q |
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| T |
49870992 |
tggttttctaacgatgagtttgcagttttggaaaactccaactgcatcaccaaagacaaagtcgattgttccggtaatggtgcagtcgcggtagaattgt |
49871091 |
T |
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| Q |
188 |
cgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcggagtgcaactgcttgatg |
285 |
Q |
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| T |
49871092 |
cttttggattgtgtgtagagtgtatcttggtaaccgttcatttcacagttgtagaacaatgctttgtctgctgttacacggagggccactgcttgatg |
49871189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 49865135 - 49865249
Alignment:
| Q |
168 |
tgcagtcacggtagaattgacgttgggattcggcgaagagtgttgcttggtaaccatctatttggcagttgtagaagattgctttgtctgctgttactcg |
267 |
Q |
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| T |
49865135 |
tgcagtcgcggtagaattgtcttttggattgtgtgtagagtgtatcttggtaaccgtccatttgacagttgtagaacaatgctttgtctgctgttacacg |
49865234 |
T |
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| Q |
268 |
gagtgcaactgcttg |
282 |
Q |
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| T |
49865235 |
gagggccactgcttg |
49865249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 6875 - 6835
Alignment:
| Q |
149 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
189 |
Q |
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| T |
6875 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
6835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 44067730 - 44067770
Alignment:
| Q |
149 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
189 |
Q |
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| T |
44067730 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44067770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 44087574 - 44087534
Alignment:
| Q |
149 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
189 |
Q |
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| T |
44087574 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44087534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 44093036 - 44093076
Alignment:
| Q |
149 |
tcgattgtgccagagatgctgcagtcacggtagaattgacg |
189 |
Q |
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| T |
44093036 |
tcgattgttccatagatgttgcagtcacggtagaattgacg |
44093076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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