View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11293A_low_105 (Length: 296)
Name: NF11293A_low_105
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11293A_low_105 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 24 - 284
Target Start/End: Original strand, 4159944 - 4160204
Alignment:
| Q |
24 |
agatctcactctatttactgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagt |
123 |
Q |
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| T |
4159944 |
agatctcactctatttgctgtcaatttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagt |
4160043 |
T |
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| Q |
124 |
aattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggta |
223 |
Q |
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|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4160044 |
gattccaaaatgattaatttggcaatgaaagattgcaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggta |
4160143 |
T |
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| Q |
224 |
agattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgt |
284 |
Q |
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| T |
4160144 |
agattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaaggttgt |
4160204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 48 - 284
Target Start/End: Complemental strand, 4172034 - 4171798
Alignment:
| Q |
48 |
tttaggttgtgatttatgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtaattcaaaaatgattaatttggca |
147 |
Q |
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| T |
4172034 |
tttaggatgtgatttatgggagtttcttaacaaaaatcctgaatataatagattgttcaatgatgctatggctagtgattccaaaatgattaatttggca |
4171935 |
T |
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| Q |
148 |
atgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattttcta |
247 |
Q |
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| T |
4171934 |
ttgaaagattgcaattttgtgtttgaggggttggattcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatatccta |
4171835 |
T |
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| Q |
248 |
agttgaaatgtgttgtttttgatcgtccaaaggttgt |
284 |
Q |
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| T |
4171834 |
agttgagatgtgttgtttttgatcgtccaaaggttgt |
4171798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 64 - 270
Target Start/End: Complemental strand, 4177641 - 4177435
Alignment:
| Q |
64 |
tgggagtttcttaacaaaaaccctgagtataatacattatacaatgatgctttggctagtaattcaaaaatgattaatttggcaatgaaagattgtaatt |
163 |
Q |
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| T |
4177641 |
tgggattttcttgataaaaatcctgaatataatagatcatttaatgatgcaatggctagtgattctaaattgataaacttggcattgagagattgtgatt |
4177542 |
T |
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| Q |
164 |
tggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgt |
263 |
Q |
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| T |
4177541 |
ttgtgtttgatggattggaatcaattgtggatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtattgt |
4177442 |
T |
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| Q |
264 |
ttttgat |
270 |
Q |
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|||||| |
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| T |
4177441 |
gtttgat |
4177435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 284
Target Start/End: Original strand, 34343525 - 34343693
Alignment:
| Q |
116 |
tggctagtaattcaaaaatgattaatttggcaatgaaagattgtaatttggtgtttgaggggttggaatcaattgtggatgttggtggtggaaatggaac |
215 |
Q |
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|||||||| |||| ||||| | |||||||| ||||| |||||| | ||||||||| ||| | || || |||||||||||||||||||||| |||||| |
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| T |
34343525 |
tggctagtgattctcaaatggtgaatttggctttgaaaaattgtagtaaggtgtttgaagggattgattctattgtggatgttggtggtggaactggaac |
34343624 |
T |
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| Q |
216 |
aactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgt |
284 |
Q |
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| T |
34343625 |
cacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgt |
34343693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 169 - 269
Target Start/End: Original strand, 34330971 - 34331071
Alignment:
| Q |
169 |
tttgaggggttggaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttg |
268 |
Q |
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||||||||| | ||||| ||||||||||||||||||||||||||||| || | ||| ||||| |||||| | ||| ||||| | |||||| ||||||||| |
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| T |
34330971 |
tttgaggggatagaatctattgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttg |
34331070 |
T |
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| Q |
269 |
a |
269 |
Q |
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| T |
34331071 |
a |
34331071 |
T |
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