View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11293A_low_120 (Length: 285)

Name: NF11293A_low_120
Description: NF11293A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11293A_low_120
NF11293A_low_120
[»] chr1 (4 HSPs)
chr1 (1-263)||(29467152-29467414)
chr1 (32-265)||(29452676-29452909)
chr1 (55-262)||(29423828-29424035)
chr1 (48-265)||(29442684-29442901)
[»] chr2 (10 HSPs)
chr2 (22-264)||(14550901-14551143)
chr2 (31-133)||(12005616-12005718)
chr2 (31-132)||(12018381-12018482)
chr2 (37-133)||(11986979-11987075)
chr2 (35-130)||(12012047-12012142)
chr2 (209-264)||(8572827-8572882)
chr2 (55-89)||(8579035-8579069)
chr2 (34-88)||(9365188-9365242)
chr2 (35-89)||(10336378-10336432)
chr2 (212-264)||(9292699-9292751)
[»] chr4 (1 HSPs)
chr4 (45-85)||(55718336-55718376)


Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 29467414 - 29467152
Alignment:
Q  1 tggtgttaggtttagaaagagcaggaatttgaatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  29467414 tggtgttaggtttagaaagagcaggagtttgaatagggagattaggaataatccgatgtttacggatgttaggattccagaaagcgattccgacattgat 29467315  T
Q  101 ggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467314 ggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagag 29467215  T
Q  201 aaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29467214 aaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaattt 29467152  T

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Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 32 - 265
Target Start/End: Complemental strand, 29452909 - 29452676
Alignment:
Q  32 aatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccg 131  Q
    ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |    
T  29452909 aatagggagattaggaatattctgatgtttacggatgttagggttccagaaagcgattccgacattggtggtaatgaagagaaggccgttacatgaactg 29452810  T
Q  132 aacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgt 231  Q
    ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  29452809 aacagagagatgttgttgttggggagtttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaaacagagttgt 29452710  T
Q  232 gtcgaaggattaagaaacgattgagggaattttg 265  Q
    |||||||||||||| |||||||||||||||||||    
T  29452709 gtcgaaggattaaggaacgattgagggaattttg 29452676  T

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Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 55 - 262
Target Start/End: Original strand, 29423828 - 29424035
Alignment:
Q  55 gatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagttgttggg 154  Q
    ||||||||| |||| |||| ||||||||||||||| |  ||| || | | | ||||||||||||||||||||| |||| ||||||||||||||||||||     
T  29423828 gatgtttacagatggtagggttccagaaagcgatttcaccatcggagaagaggcagagaaggccgttacatgatccgaccagagagatgaagttgttgga 29423927  T
Q  155 gattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaaacgattg 254  Q
    |  |||||||||| |||||||||||| |  ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  29423928 gcctttgaaaggaggattgagtttaacggcggtagttaggttagagaaatcgttgatttggtagaaatcagagttgtgtcgaaggattaaggaacgattg 29424027  T
Q  255 agggaatt 262  Q
    | ||||||    
T  29424028 aaggaatt 29424035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 48 - 265
Target Start/End: Complemental strand, 29442901 - 29442684
Alignment:
Q  48 ataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaacagagagatgaagt 147  Q
    |||||| | ||||||||||||||||| |||||||||||||||||  |||||| |||||||||||||||||||||||||||||| |  ||||| |||  ||    
T  29442901 ataatccggtgtttacggatgttagggttccagaaagcgattccagcattggaggaaatgcagagaaggccgttacatgaacctagaagagacatgcggt 29442802  T
Q  148 tgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaatcggagttgtgtcgaaggattaagaa 247  Q
    || ||||   | |||||||||  |||||||||| || ||||||||||||||||||||| | |||||||||||||||  |||||||||||||||||||| |    
T  29442801 tgatgggacctgtgaaaggaatgttgagtttaacgccggtggttaggttagagaaatcttcgatttggtagaaatcaaagttgtgtcgaaggattaagga 29442702  T
Q  248 acgattgagggaattttg 265  Q
    |||||||||| |||||||    
T  29442701 acgattgaggaaattttg 29442684  T

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Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 22 - 264
Target Start/End: Original strand, 14550901 - 14551143
Alignment:
Q  22 caggaatttgaatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgtt 121  Q
    |||||||  |||||||||||| ||| |||||  ||||||||||||||||||| ||||| ||||| ||| || ||||||   | ||| ||||||| |||||    
T  14550901 caggaataagaatagggagatcagggataatgcgatgtttacggatgttagggttccataaagcaatttcgccattggaaaagatgtagagaagaccgtt 14551000  T
Q  122 acatgaaccgaacagagagatgaagttgttggggattttgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaaa 221  Q
    ||||||||||| |||||||||||||||||||  |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  14551001 acatgaaccgagcagagagatgaagttgttgaagccttcgaaaggaagattgagtttaatgcgggtggttaggttagagaaatcgttgatttggtagaga 14551100  T
Q  222 tcggagttgtgtcgaaggattaagaaacgattgagggaatttt 264  Q
    | ||| |||||||||||||||||| ||| ||||||||||||||    
T  14551101 ttggacttgtgtcgaaggattaaggaacaattgagggaatttt 14551143  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 31 - 133
Target Start/End: Complemental strand, 12005718 - 12005616
Alignment:
Q  31 gaatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 130  Q
    |||||||||||||||| |||||| ||||||||||||||||||| |||||||||| |||| || | |||| |||||||||||| |||||||||||||||||    
T  12005718 gaatagggagattagggataatccgatgtttacggatgttagggttccagaaagtgatttcggctttggaggaaatgcagaggaggccgttacatgaacc 12005619  T
Q  131 gaa 133  Q
    |||    
T  12005618 gaa 12005616  T

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Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 12018482 - 12018381
Alignment:
Q  31 gaatagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 130  Q
    |||||||||||| ||| |||||| ||||||||||||||| ||| ||||||||||||||| ||   |||| |||||||||||| |||||||||||||||||    
T  12018482 gaatagggagatgagggataatccgatgtttacggatgtaagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaacc 12018383  T
Q  131 ga 132  Q
    ||    
T  12018382 ga 12018381  T

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Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 133
Target Start/End: Complemental strand, 11987075 - 11986979
Alignment:
Q  37 ggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaaccgaa 133  Q
    |||||| ||| |||||| ||||||||||| ||||||| ||||||||||||||| ||   |||| |||||||||||| ||||||||||||||||||||    
T  11987075 ggagatgagggataatccgatgtttacgggtgttagggttccagaaagcgatttcgttgttggaggaaatgcagaggaggccgttacatgaaccgaa 11986979  T

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Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 130
Target Start/End: Complemental strand, 12012142 - 12012047
Alignment:
Q  35 agggagattaggaataatctgatgtttacggatgttaggattccagaaagcgattccgacattggtggaaatgcagagaaggccgttacatgaacc 130  Q
    |||||||||||| |||||||||||||||||||||||||| |||||||| ||| || ||   || | |||||||||||  |||||||||||||||||    
T  12012142 agggagattagggataatctgatgtttacggatgttagggttccagaacgcggtttcggtgtttgaggaaatgcagatgaggccgttacatgaacc 12012047  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 209 - 264
Target Start/End: Complemental strand, 8572882 - 8572827
Alignment:
Q  209 gatttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt 264  Q
    ||||||||||| |||| ||||| |||||| ||||||| ||||||||||||||||||    
T  8572882 gatttggtagatatcgtagttgcgtcgaatgattaaggaacgattgagggaatttt 8572827  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Complemental strand, 8579069 - 8579035
Alignment:
Q  55 gatgtttacggatgttaggattccagaaagcgatt 89  Q
    ||||||||||||||||||| |||||||||||||||    
T  8579069 gatgtttacggatgttagggttccagaaagcgatt 8579035  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 9365188 - 9365242
Alignment:
Q  34 tagggagattaggaataatctgatgtttacggatgttaggattccagaaagcgat 88  Q
    |||| |||| ||| || ||| ||||||||||||||||||| ||||||||||||||    
T  9365188 taggaagataagggatgatccgatgtttacggatgttagggttccagaaagcgat 9365242  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 10336378 - 10336432
Alignment:
Q  35 agggagattaggaataatctgatgtttacggatgttaggattccagaaagcgatt 89  Q
    |||||||| ||| |||||| |||||||||||||| ||||||| ||||| ||||||    
T  10336378 agggagataagggataatccgatgtttacggatggtaggattacagaatgcgatt 10336432  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 264
Target Start/End: Original strand, 9292699 - 9292751
Alignment:
Q  212 ttggtagaaatcggagttgtgtcgaaggattaagaaacgattgagggaatttt 264  Q
    |||||||| |||| | |||||||||||||||||| | || |||||||||||||    
T  9292699 ttggtagagatcgaatttgtgtcgaaggattaaggatcggttgagggaatttt 9292751  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 55718336 - 55718376
Alignment:
Q  45 ggaataatctgatgtttacggatgttaggattccagaaagc 85  Q
    ||||||||| |||||||||||||  ||||||||||||||||    
T  55718336 ggaataatccgatgtttacggatcgtaggattccagaaagc 55718376  T

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